PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684839.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 376aa MW: 41958.7 Da PI: 5.5318

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.8e-41	73	149	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C++dls++keyhrrhkvCe hsk+pvv+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q XP_020684839.1 73 CLVDDCKSDLSSCKEYHRRHKVCELHSKTPVVMVGGQEQRFCQQCSRFHLLMEFDEVKRSCRKRLDGHNRRRRKPQV 149 9*************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDWDSKMTLC ELPELEQNDG EANLSLDCSV DLKLGGLGDL GLAENWKEQR RASTASSSKR 60 QRAPGNSSQT VFCLVDDCKS DLSSCKEYHR RHKVCELHSK TPVVMVGGQE QRFCQQCSRF 120 HLLMEFDEVK RSCRKRLDGH NRRRRKPQVE ANSGNLFSNQ HASRFSSYPQ NFPSAGTEAA 180 WNSSVKIEED TLYPLLPPPI TQFVDRVPQP PSHHFATVFD PNYEENKQFF LHDGRDIAHS 240 SRIAIERATV CQPLLNTISS AAESSTNSIL FSDRLSPVFD SDCALSLLSS SAQTSCINQS 300 HMVPADRIPM GQPLLSNLHY GVSLSGYSHS PMEEDHVGTV LVPDSAETDL HCQSMFQVGD 360 EEASDCASES IPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDWDSKMTLC ELPELEQNDG EANLSLDCSV DLKLGGLGDL GLAENWKEQR RASTASSSKR  60
QRAPGNSSQT VFCLVDDCKS DLSSCKEYHR RHKVCELHSK TPVVMVGGQE QRFCQQCSRF  120
HLLMEFDEVK RSCRKRLDGH NRRRRKPQVE ANSGNLFSNQ HASRFSSYPQ NFPSAGTEAA  180
WNSSVKIEED TLYPLLPPPI TQFVDRVPQP PSHHFATVFD PNYEENKQFF LHDGRDIAHS  240
SRIAIERATV CQPLLNTISS AAESSTNSIL FSDRLSPVFD SDCALSLLSS SAQTSCINQS  300
HMVPADRIPM GQPLLSNLHY GVSLSGYSHS PMEEDHVGTV LVPDSAETDL HCQSMFQVGD  360
EEASDCASES IPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	147	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-42	SBP family protein