PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020684825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 170aa MW: 19528.9 Da PI: 5.5534 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.1 | 6e-54 | 40 | 142 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q i++++dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdfl XP_020684825.1 40 QLQMFWADQyreIDQTSDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFL 134 89*****999999********************************************************************************** PP NF-YC 93 vdivprde 100 vdivpr+e XP_020684825.1 135 VDIVPREE 142 ******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MDQQGHGSQA PMGVGANVPY QAYPQLYHHQ QQQQQQQQQQ LQMFWADQYR EIDQTSDFKN 60 HSLPLARIKK IMKADEDVRM IAAEAPVVFA RACEMFILEL THRSWAHAEE NKRRTLQKND 120 IAAAITRTDV FDFLVDIVPR EEGNEDIGRP SVMTAPAPAG DPLAYYYIQQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 5e-65 | NF-YC family protein |