PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020684394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 699aa MW: 77546.4 Da PI: 6.1664 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+ n++p++++r +L++ lgL+ rq+k+WFqNrR+++k XP_020684394.1 16 KKRYHRHTPRQIQELEAMFKINPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71 688999***********************************************999 PP | |||||||
2 | START | 154.9 | 6.5e-49 | 210 | 433 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la + ++el+++a+ +ep+W++ +++n +++ ++f++ v ++e +r+sg v m++ lv ++d + +W e ++ a t XP_020684394.1 210 LATRSMEELIRLAQTDEPLWTRIGtngrQILNLETYERIFPKP-VqqfrspdTRVESSRDSGDVMMNSLALVDMFMDPG-KWMELFPsivsNART 302 78899******************99999999999999999763.35789**99**************************.*******9999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 +ev++ g gal+lm+ e+ lsp+vp R+f f+Ry++ql+++ wvi d+S+ +++++ ss+ ++ +lpSg+li++++ng+skv+wveh XP_020684394.1 303 IEVLMHGmdgsrsGALVLMYGEFLGLSPVVPlREFFFLRYCQQLEQDLWVISDISILYPKENQ-FSSSTKC-RLPSGCLIQDMPNGYSKVVWVEH 395 **************************************************************9.5677776.69********************* PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++ +++ p h+l++ lv sg+a+ga++w atlqr ce+ XP_020684394.1 396 MEIEEKNPiHQLYHDLVDSGIAFGAQRWIATLQRMCER 433 ************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence |
MDSGDEQDVT ESKGKKKRYH RHTPRQIQEL EAMFKINPHP DEKQRMQLSR DLGLEPRQIK 60 FWFQNRRTQM KTQHERADNC ALRSENDKIR CENIAMREAL KNAICPTCGS SQESEDSYFD 120 EQKLRMENAR LKEELDRVST ITSKYLGRPI TQLPPIQPLS VSSLDLTVGG YGNPGFAPSL 180 DIDQLGVGPP TMAFPFLTIS EIERPMMVEL ATRSMEELIR LAQTDEPLWT RIGTNGRQIL 240 NLETYERIFP KPVQQFRSPD TRVESSRDSG DVMMNSLALV DMFMDPGKWM ELFPSIVSNA 300 RTIEVLMHGM DGSRSGALVL MYGEFLGLSP VVPLREFFFL RYCQQLEQDL WVISDISILY 360 PKENQFSSST KCRLPSGCLI QDMPNGYSKV VWVEHMEIEE KNPIHQLYHD LVDSGIAFGA 420 QRWIATLQRM CERIACLMVT GNSPRDLGGV IPTAEGKRSM MRLSQRMVSN FCSTLGSSNG 480 HRWTAPAGLN DVGIRVTVHK CSDSGQPNGV FLTAATSIWL PFSPQAVFSF FRDERSRVQW 540 DVLSNGKAVQ EVTRIANGQH PGNCISLLRA AMNPSNPNEG NMLILQESCT DPSGSLVVYA 600 SIDLASINIA MSGEDTSYIP LLPSGFTVLP DGRPGTGSNA SSSSNPMGGS SGSVLTVAFQ 660 IMVSSLPSAK LNLESVATVN NIIGATVQQI KAALSSPGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | HD-ZIP family protein |