PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684284.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 731aa MW: 81297.8 Da PI: 6.7726

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.4e-15	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a +++G W +I +++ ++t+ q++s+ qk+ XP_020684284.1 92 REKWTDEEHNRFLEALRLHGRA-WQRIQEHIS-TKTAVQIRSHAQKF 136 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MPNRQLPSPA ITASMFLLVH KPTMARWAIV DRIALGANVR RRRSREERNR EIDMRLRPPE 60 FLSCFYGFFV MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH 120 ISTKTAVQIR SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS 180 PFVEVKEKNL SQAFVSLGTD EVAMDTKIKS YQEPVKVAIE QNTKQAFGEG TSSASIYFHL 240 NSTSEPLEQM PTLEELKETR SRITKELRKN DSDLQIFGMS TDSRFGFTTE EKWQVLGHME 300 MPFTSWKDNL QGGENHENIP AQFEGTKYSD EDISKSVSTQ LEANADLNLS LDSTRTTIHR 360 TKNSISSIHQ AVPSISLHNP FSNDDNPFSA LINLTNYFPS LLVSALSQNP AVHQAASIAA 420 ASLPPAYVDF SMQSNSKLVG EAPEKQSSAS SGISAIVTAT IAAAAAWWRV HGLLQSPSQP 480 NHAFTQVMVQ ATESAQVPED NSDSKGNFSQ THKRKFQQIE QQETNIAIQP SSALLEISSS 540 PDTCQSTKSA RSPKSTKCAE TAICGIHDVD HVPGKKKHDP SSCDSNTSPS SEVEKDAALN 600 KEEAKGINEQ GEQGPSIIQE FGDTPGISKS STEGLKQDSI AFEELFYRQL LPHCFSPLHL 660 DGNWTTNSGN EEAPGLQIDL NRKVFTPSST CNISRENAQS STNNGSEVAT FNRHLVETEE 720 RKAVERELVY E

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MPNRQLPSPA ITASMFLLVH KPTMARWAIV DRIALGANVR RRRSREERNR EIDMRLRPPE  60
FLSCFYGFFV MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH  120
ISTKTAVQIR SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS  180
PFVEVKEKNL SQAFVSLGTD EVAMDTKIKS YQEPVKVAIE QNTKQAFGEG TSSASIYFHL  240
NSTSEPLEQM PTLEELKETR SRITKELRKN DSDLQIFGMS TDSRFGFTTE EKWQVLGHME  300
MPFTSWKDNL QGGENHENIP AQFEGTKYSD EDISKSVSTQ LEANADLNLS LDSTRTTIHR  360
TKNSISSIHQ AVPSISLHNP FSNDDNPFSA LINLTNYFPS LLVSALSQNP AVHQAASIAA  420
ASLPPAYVDF SMQSNSKLVG EAPEKQSSAS SGISAIVTAT IAAAAAWWRV HGLLQSPSQP  480
NHAFTQVMVQ ATESAQVPED NSDSKGNFSQ THKRKFQQIE QQETNIAIQP SSALLEISSS  540
PDTCQSTKSA RSPKSTKCAE TAICGIHDVD HVPGKKKHDP SSCDSNTSPS SEVEKDAALN  600
KEEAKGINEQ GEQGPSIIQE FGDTPGISKS STEGLKQDSI AFEELFYRQL LPHCFSPLHL  660
DGNWTTNSGN EEAPGLQIDL NRKVFTPSST CNISRENAQS STNNGSEVAT FNRHLVETEE  720
RKAVERELVY E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	2e-30	MYB_related family protein