PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684022.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 457aa    MW: 50245.4 Da    PI: 6.6478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.62.1e-82764413373
            GRAS   3 elLlecAeavssgdle..laqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     +lL+++Aea++  +++  la  +L rl+el     ++++ ++Rla +ft+AL++ l++++++        +      ++el+al+l +++sP++ 
  XP_020684022.1  76 HLLMAAAEALNGPHKQraLAGVILFRLKELlvpTESAATIVERLALHFTKALQSLLSGKGPSF------HRH---PAADELTALQLMQDMSPYIS 161
                     89*********85555338999********55333444779*****************33333......333...378999************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     f+hltaNqaIl+av+g ++vHi+Dfdi++GlQWp+L+qaL s ++g   +pslRiT+v+s  + s+ ++eetg+rL+ fA+++ +pf+f+     
  XP_020684022.1 162 FGHLTANQAILDAVSGFQQVHIVDFDIKEGLQWPSLIQALVSHKNGnftSPSLRITAVAS-GKWSTAKVEETGQRLTAFAASVSLPFSFDHCRLG 255
                     *****************************************999766779**********.556***************************8888 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdslea 273
                     r + +++ + r+ +g+a++ n+vlq  +++++++++ +   +++ +   + + +v+vve+e d +++       F  +f++ ++ ++a++++le+
  XP_020684022.1 256 RNQRFRPAAVRTVKGDAVILNCVLQWPQTPHRTATSVK---SFIGAAAAVGACLVTVVEEENDGGEAtvaaaaGFTGKFMDEMKRHWAMMEALEE 347
                     ******************************88888888...********************8887766777779********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p++  +r +vE+e+l+++i  +v ++  e   ++ ++++W   + +aGF+ v ls ++++qa++l++ ++  gyrveee s+ lvl Wk+r+L
  XP_020684022.1 348 GFPKQRMAREMVEKEILAPRIAAAVWKAYCE---EEGEVGEW---MAAAGFRRVDLSGFNVSQARMLIKLFN-YGYRVEEEySNKLVLRWKSRRL 435
                     ****************************999...44456777...999************************.99****7769************ PP

            GRAS 368 vsvSaW 373
                     v ++ W
  XP_020684022.1 436 VCATTW 441
                     ****** PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MEEDTLPVQI SHYFSTTFNA DIAWAQNSPA TDWSSFSGNG LPIPFDGFDD QIFSCLLSDN  60
PPLATASDEK RLRIFHLLMA AAEALNGPHK QRALAGVILF RLKELLVPTE SAATIVERLA  120
LHFTKALQSL LSGKGPSFHR HPAADELTAL QLMQDMSPYI SFGHLTANQA ILDAVSGFQQ  180
VHIVDFDIKE GLQWPSLIQA LVSHKNGNFT SPSLRITAVA SGKWSTAKVE ETGQRLTAFA  240
ASVSLPFSFD HCRLGRNQRF RPAAVRTVKG DAVILNCVLQ WPQTPHRTAT SVKSFIGAAA  300
AVGACLVTVV EEENDGGEAT VAAAAGFTGK FMDEMKRHWA MMEALEEGFP KQRMAREMVE  360
KEILAPRIAA AVWKAYCEEE GEVGEWMAAA GFRRVDLSGF NVSQARMLIK LFNYGYRVEE  420
EYSNKLVLRW KSRRLVCATT WAVPPAAAAE AARETCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-92GRAS family protein