PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020684021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 28250.8 Da PI: 4.9071 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 64.2 | 2.4e-20 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +tl+ ++++vt fdfl+d+v + XP_020684021.1 7 TRFPASRIKKIMQADEDVGKIALPVPVLVSKALELFLQDLCDRAYEVTIQKGAKTLNSLHLKQCVTTNSAFDFLTDVVNK 86 579**************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
MRKKLGTRFP ASRIKKIMQA DEDVGKIALP VPVLVSKALE LFLQDLCDRA YEVTIQKGAK 60 TLNSLHLKQC VTTNSAFDFL TDVVNKVPNL GGTESFADEK GISRRRKALV HDGEILTEDL 120 RSAKAAMRSI NMSPRGRARG RGRGRGRPPL NRTIEKESSY MKFEEEIDLS PEHDDPDTPA 180 AETEVAEKEK ENKNPTDLII TNTAALAPTT TEAKQEGYSA WPLPDVVTNL GIEPSNLVNL 240 NMQIDEDEDY DNED |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 144 | RGRARGRGRG |
2 | 135 | 145 | RGRARGRGRGR |
3 | 137 | 146 | RGRARGRGRG |
4 | 137 | 147 | RGRARGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-48 | NF-YC family protein |