PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683910.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 454aa MW: 49145.4 Da PI: 6.7117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	271	318	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++ Lq XP_020683910.1 271 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQLLQ 318 8***********************9....556*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MEKEAFFGNS TVINWQMRSP DAAASLPNMN SGHVNIVWDQ TIDQSAKFGS ALSSLVSSPS 60 SNPPAAPGGG DSVVIRELIG RLGSICNSDE ISAPSPHYHS ANNSCYSTPM NSPPKLNLSI 120 FPNPAHMPFS ADPGFVERAA RCSTFGCSGG GSHGGEQFIF PEVGKLGNAP EESCGSGNAK 180 KRKAVMKGKG KEAPLSSSIT AVTNPPKKAS VGGLNTKRSK PSEKTGIEEE SARQDGDAAS 240 KKMEEEKIAK PPEAVKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCSKV 300 TGKAVMLDEI INYVQLLQRQ VEFLSMKLAT VNPQIDFNME NFVNKDMEIH QNCGLLPPQP 360 VYPLEATASS FSFANLPERT PLISINGLEL QSQVNPFSQP NLSRNLTMQL PPLEGFADTA 420 CQLGTFWDDD LRTVVQMGFS QNQENLFSSQ SFQG

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MEKEAFFGNS TVINWQMRSP DAAASLPNMN SGHVNIVWDQ TIDQSAKFGS ALSSLVSSPS  60
SNPPAAPGGG DSVVIRELIG RLGSICNSDE ISAPSPHYHS ANNSCYSTPM NSPPKLNLSI  120
FPNPAHMPFS ADPGFVERAA RCSTFGCSGG GSHGGEQFIF PEVGKLGNAP EESCGSGNAK  180
KRKAVMKGKG KEAPLSSSIT AVTNPPKKAS VGGLNTKRSK PSEKTGIEEE SARQDGDAAS  240
KKMEEEKIAK PPEAVKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCSKV  300
TGKAVMLDEI INYVQLLQRQ VEFLSMKLAT VNPQIDFNME NFVNKDMEIH QNCGLLPPQP  360
VYPLEATASS FSFANLPERT PLISINGLEL QSQVNPFSQP NLSRNLTMQL PPLEGFADTA  420
CQLGTFWDDD LRTVVQMGFS QNQENLFSSQ SFQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-78	bHLH family protein