PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683892.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 339aa    MW: 36951.1 Da    PI: 8.731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.26.4e-14202228127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kte+Cr + ++G+C++G+rC+FaHg+
  XP_020683892.1 202 FKTEICRSWEESGFCRFGSRCQFAHGK 228
                     79***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MRGSSDSDVT NVSVGSSGSR TENLATARRR FLPSSSPNAF LTPAFTAAAS AGGSISNSPL  60
DIDPSLLRFT QSRLSRLHFS SSSSSNESPD SSSPSAAVAA RMRLQQLLNL KSLSSSSRRG  120
STRSPLSPIE NLQTPPLATM SSPSYHIYNN PMKMMEEDVL VMDALSESVL MPGRTRQPLE  180
HFTSSSSSSS ANHNSVNANF FFKTEICRSW EESGFCRFGS RCQFAHGKEE LRDSPRHSNL  240
KPESGKLGPV VASSVYDDKY ARSEAIDSTS ARPVVIGKTG SKKMKIINSN RDSLQQKQDP  300
QFSWPPTDGE EAEIQQLLYG PNRCGRRLPV FTDICPDPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-09C3H family protein