PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683873.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 469aa MW: 53028.2 Da PI: 4.5112

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.1	8.9e-36	29	119	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++e++sws++++sfvv+++ ef++++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F kg+k+ll++ XP_020683873.1 29 FLLKTYDMIDDSSTNEIVSWSSTNSSFVVWNPPEFSSRLLPTYFKHSNFSSFIRQLNTYGFHKIDPER---------WEFANEDFVKGQKHLLKN 114 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_020683873.1 115 IHRRK 119 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEQALPLSDA SATFSSDAAG SSAGGPAPFL LKTYDMIDDS STNEIVSWSS TNSSFVVWNP 60 PEFSSRLLPT YFKHSNFSSF IRQLNTYGFH KIDPERWEFA NEDFVKGQKH LLKNIHRRKP 120 IHSHSQPPAD AERAALEEEI ENLQKDKARL QADSWRFKQQ HSNAIIQLEY LEQRMRDMEQ 180 RQEKMVSFLQ RAAQNPKFVE KIIKMAGAQD FSTLQRKRRL PEANCCPEIS ENSFCENSVN 240 STGNLRLVGE VGDLPDQELC DKLKLGLCTA ISDNNLVPPC SQSWNEDYQS LHGSDTNEGD 300 LLRIECLPLV PETLELSDTG ASFCPRKISL LMTDLEDGND GLLSCHLDLT LASSSMQTDR 360 IDQLNRIPST IDLDMANVVD RRGKEDEVNK IEGSKIEVAL ASNNTPLPIT TTGRVNDKFW 420 EQFLTERPGS SDTEEASSSL KEDEEEQEEM MLVQEKNQRN IKDMEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEQALPLSDA SATFSSDAAG SSAGGPAPFL LKTYDMIDDS STNEIVSWSS TNSSFVVWNP  60
PEFSSRLLPT YFKHSNFSSF IRQLNTYGFH KIDPERWEFA NEDFVKGQKH LLKNIHRRKP  120
IHSHSQPPAD AERAALEEEI ENLQKDKARL QADSWRFKQQ HSNAIIQLEY LEQRMRDMEQ  180
RQEKMVSFLQ RAAQNPKFVE KIIKMAGAQD FSTLQRKRRL PEANCCPEIS ENSFCENSVN  240
STGNLRLVGE VGDLPDQELC DKLKLGLCTA ISDNNLVPPC SQSWNEDYQS LHGSDTNEGD  300
LLRIECLPLV PETLELSDTG ASFCPRKISL LMTDLEDGND GLLSCHLDLT LASSSMQTDR  360
IDQLNRIPST IDLDMANVVD RRGKEDEVNK IEGSKIEVAL ASNNTPLPIT TTGRVNDKFW  420
EQFLTERPGS SDTEEASSSL KEDEEEQEEM MLVQEKNQRN IKDMEQLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-118	HSF family protein