PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683815.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GeBP

Protein Properties

Length: 538aa MW: 59913.3 Da PI: 4.8621

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	83.3	3.3e-26	340	437	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +f+r+ws+eDe++lLqG++++k+++ p+ + + + + vk+ +s+ vs +q+ +K+rrLK+++ + + +++ k+ +fs +h+ +f+lskk XP_020683815.1 340 HFRRIWSNEDELALLQGIMEYKEQHRIIPYThtHAESLLKSVKDLLSISVSVNQINNKVRRLKRRYINTSIRQNLAKKSKFSDPHNAAAFDLSKK 434 79***********************7776336778****************************************************** PP DUF573 95 iWg 97 iW+ XP_020683815.1 435 IWD 437 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MAKKPMKKRP PPPPPSFSTS SDEEAPSPSI FLVKKLTAST SLKPADGEQE EESFEDSKYA 60 APKRSHQAAP QVSRNTANDL KLEKPSAANK TARTVSLAED DESSEGEEEE STDEESSEDS 120 ENAVREPNPQ TQRRDSQTAN DGKHELSNTS SSSDSGAEDG EEDSKELNSR FKLEQLLPPP 180 PPKPARNAVN PVVDPLLKKP NSEKSVDGGE DDKGLESEEE EEEEESTANE SSEGFGNTMA 240 KENAGPQQPR DSQNLYDDKQ ASDTPSSSGS GLGDDEEDIE TPISDALLVP LSCKPVDSSV 300 QPAEKEPNSG KQSAASATQI SKKKRTADIV GVVGDQEKEH FRRIWSNEDE LALLQGIMEY 360 KEQHRIIPYT HTHAESLLKS VKDLLSISVS VNQINNKVRR LKRRYINTSI RQNLAKKSKF 420 SDPHNAAAFD LSKKIWDSLK EESIFLEKKI MLEKKENFNK KKVGLKHIEE EYPSLNWHLR 480 NEHANNALLL QKNMPIANAK KWEERCKKLE MIDFELNMQK IEFLSAAVKL IKDALAKC

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MAKKPMKKRP PPPPPSFSTS SDEEAPSPSI FLVKKLTAST SLKPADGEQE EESFEDSKYA  60
APKRSHQAAP QVSRNTANDL KLEKPSAANK TARTVSLAED DESSEGEEEE STDEESSEDS  120
ENAVREPNPQ TQRRDSQTAN DGKHELSNTS SSSDSGAEDG EEDSKELNSR FKLEQLLPPP  180
PPKPARNAVN PVVDPLLKKP NSEKSVDGGE DDKGLESEEE EEEEESTANE SSEGFGNTMA  240
KENAGPQQPR DSQNLYDDKQ ASDTPSSSGS GLGDDEEDIE TPISDALLVP LSCKPVDSSV  300
QPAEKEPNSG KQSAASATQI SKKKRTADIV GVVGDQEKEH FRRIWSNEDE LALLQGIMEY  360
KEQHRIIPYT HTHAESLLKS VKDLLSISVS VNQINNKVRR LKRRYINTSI RQNLAKKSKF  420
SDPHNAAAFD LSKKIWDSLK EESIFLEKKI MLEKKENFNK KKVGLKHIEE EYPSLNWHLR  480
NEHANNALLL QKNMPIANAK KWEERCKKLE MIDFELNMQK IEFLSAAVKL IKDALAKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-16	GeBP family protein