PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683779.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 268aa    MW: 30011.6 Da    PI: 4.96
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683779.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19123173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAa+a+++a+ +++g
  XP_020683779.2 123 RYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTFDTAMEAARAYDRAAFQMRG 173
                     7********.**********96554..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
METAQSISVL NQIREHLFGD AAASFDDLFT SFPSPPPAAT TSSSELTISD YLDQTDIQTS  60
PIPDHYGGGF RFCEPAQKMI RFGGDRSEIG LMRNIPNAVA PQVEWINASD GDLRPAELFD  120
FHRYRGVRQR PWGKFAAEIR DPKRRGSRVW LGTFDTAMEA ARAYDRAAFQ MRGSKAILNF  180
PNEVGSSANW VRPAMAVEKR GREDEAAERE VKRTREEESE RNIPSEGPLT PSIWSVVLEG  240
ADVEELFNMP PLSPLSPHPS LRFPQLIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-28ERF family protein