PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020683665.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 34978.4 Da PI: 4.5667 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 295 | 316 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+ksF++ L++H + H XP_020683665.1 295 CKTCSKSFNTENALQSHTKAkH 316 *****************99877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence |
MEFWGVEVKP GQTVKCEPGD EGYLHLSQAS LGEIKKDKGT GNVPVFVKFN DQKLVLGTLS 60 TENCAQIQYD IVFEKEFELS HGSKNTSVFF VGYKSIHENY ASEDDLDGSD VEAYLNDPKE 120 IGEGWLKKKN LVKPGKVAAA DKDDTVAAKA KTQTGKQDKV EKPKLDDIQN KADDDDEEDK 180 DEDDSNEESD DDDDYNDDEE LVKGMIDSDS DDEDKDDSSE DEKANLKVEN GKKRSADAAL 240 KSPIGKKSKT ITPAGNLKIA GDTKKGSQTP IPQITKQAGN KAKQQTPKSS GSVMCKTCSK 300 SFNTENALQS HTKAKHSGAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44750.2 | 1e-28 | C2H2 family protein |