PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683319.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 353aa    MW: 40412.6 Da    PI: 7.3827
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683319.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.61.1e-117133830373
            GRAS  30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                     ++sp+g+++qRl+ayfteALa r a+++++++++ pp+e +e+n  +e++al+++++v+Pi++f h+t N+ +l a+eg+er+HiiDfdi+qGlQ
  XP_020683319.2   1 MSSPTGTSIQRLVAYFTEALAFRAAKKWQHIFSIAPPRELTEMNDNDEAMALRILNNVTPIIRFIHFTLNERLLTAFEGKERIHIIDFDIKQGLQ 95 
                     589******************************************************************************************** PP

            GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                     Wp+Ll++Las p++p ++R+Tg+g+    sk+el++tg rLa +A++l++pfef+  v++r+ed++l++L+vk++E++aVn+vlqlhr l  + +
  XP_020683319.2  96 WPSLLHSLASMPNPPTHVRVTGIGE----SKQELQNTGTRLAGLAQALKLPFEFHS-VVDRIEDVRLWMLHVKENECVAVNCVLQLHRALYAKNH 185
                     *************************....***************************.7********************************76666 PP

            GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                     +     ++L l++s++P +v ++e ea+hn+ ++ +rf++al+yysa+fd l+ ++  +s  rik+E++ ++r+i+n+va eg er+erhe++ +
  XP_020683319.2 186 IVL--MAMLGLIRSTNPSIVLMAETEAEHNELKWEKRFANALKYYSAVFDLLDYSFTGDSASRIKIEEM-FARKIRNLVAYEGVERIERHERFDR 277
                     666..9***************************************************************.************************* PP

            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg..slvlgWkdrpLvsvSaW 373
                     Wr ++e+ GF+ v ++e++  q klll++++ + y+v++  +   l+l W+d++L++vSaW
  XP_020683319.2 278 WRGMMEDGGFRFVGFNEREIIQSKLLLKMYNCENYSVDKGGNgfGLTLKWMDQSLYTVSAW 338
                     *******************************999****885512456************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MSSPTGTSIQ RLVAYFTEAL AFRAAKKWQH IFSIAPPREL TEMNDNDEAM ALRILNNVTP  60
IIRFIHFTLN ERLLTAFEGK ERIHIIDFDI KQGLQWPSLL HSLASMPNPP THVRVTGIGE  120
SKQELQNTGT RLAGLAQALK LPFEFHSVVD RIEDVRLWML HVKENECVAV NCVLQLHRAL  180
YAKNHIVLMA MLGLIRSTNP SIVLMAETEA EHNELKWEKR FANALKYYSA VFDLLDYSFT  240
GDSASRIKIE EMFARKIRNL VAYEGVERIE RHERFDRWRG MMEDGGFRFV GFNEREIIQS  300
KLLLKMYNCE NYSVDKGGNG FGLTLKWMDQ SLYTVSAWAP MEIGGTSSAL QPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-137GRAS family protein