PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683187.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 832aa    MW: 93196.6 Da    PI: 6.6625
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      g  ++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_020683187.1 146 FCKILTASDTSTHGGFSVLRRHADEClplldmG-RQPPSQELVAQDLHGVEWRFRHIFRGQPRRHLLQSGWSFFVSSKRLIAGDAFIFL--RGEN 237
                     99*****************************54.555667*************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_020683187.1 238 GELRVGVRRA 247
                     99*****996 PP
2Auxin_resp106.72.5e-35272354183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+++Pr+s+ eF+++++++ ++lk++ s+Gm+fkm+fe+e+++e+r++Gt+vg+ dld+++Wp SkWr+Lk
  XP_020683187.1 272 AWHAITTGTMFTVYHKPRTSPCEFIIPFDRYIESLKNNHSIGMKFKMKFEGEEAPEQRFTGTIVGIGDLDSSSWPASKWRCLK 354
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    
MASFDVSAKP GSCSIHDENF LSGANPSVSS PAQKGAEDVL YNELWQACAG PLVTIPRLGE  60
LVFYFPQGHV EQVEASTNQA VNQQMPIYDL PSKILCRVVN VDLKAELDTD EVYAQITLFP  120
EPNQDENAIK KEPPPLLPPR PHIHSFCKIL TASDTSTHGG FSVLRRHADE CLPLLDMGRQ  180
PPSQELVAQD LHGVEWRFRH IFRGQPRRHL LQSGWSFFVS SKRLIAGDAF IFLRGENGEL  240
RVGVRRAMRQ KTNIPSSVIS SHSMHLGIIA TAWHAITTGT MFTVYHKPRT SPCEFIIPFD  300
RYIESLKNNH SIGMKFKMKF EGEEAPEQRF TGTIVGIGDL DSSSWPASKW RCLKVRWDEI  360
SSIPRPERVS PWQIEPATTP VSPLPLPRPK RPRGNVMPST SNSSALVREG TCKVAEEPSQ  420
THEIVMEMKG KNVSNLKNSN SRNEMDFDLK TSGWTTSIEG VKNLGSSQKS LSLDGCIHKV  480
RHETMYTDML TGFETSAGLQ HYGMPSSVHS SGDAKSSRNY FPSQDGESNL LSSELSLMPS  540
HTSMHFEGKM PTQTSELCYR DNQNPGFYGV GRYSLAHCLA SQQHYPNWLI HSSVNSGAES  600
LLQAKVPTLQ PFTAANDEVL KPKEGGIYKL FGFNLNGNPW NSKPVMPEVN ICQEATLFTE  660
PKAILPKQFV PESDQLSDRF KGRKSVDVIY SPKEYEKCAQ FSLQSAKDMH KQGILLGKSV  720
DLTRFSSYAE LIADLDKMFK FGGELIGSSR KWMVVYTDNE GDMMLVGDDP WEEFCSIVCE  780
IYIYTTEEVH KMNPGTLERR PEDNARLLKD NIVAEEIKAA PSDFESKSHE IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein