PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683158.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 471aa MW: 52499.5 Da PI: 4.7797

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.1	2.7e-27	145	210	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg XP_020683158.1 145 RYDSSLGLLTKKFINLLKTAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 210 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MSGGRGAGNR PTQPPAQIFH PLKHNLPFSS SRPPFVSPDE YHRFSPARNH RDATAEVAEA 60 IVIKTPLKRK AVHDDNDVAE SAEWINSPGQ AEVDSNSLLT PVSGKGGRNY GRSKVAKFYK 120 SVPQTPMSNT GSPSNNLLTP ATTCRYDSSL GLLTKKFINL LKTAQDGILD LNKAAETLEV 180 QKRRIYDITN VLEGIGLIEK KLKNRIRWKG LDDLRSGDFE DGVSVLQSEV EKLGLQERNL 240 DAHISEMQQQ IRELSENENS SKWLYVTEDD IKSLPCFHNE TLIAIKAPHG TTLEVPDPDE 300 AGEYPQRRYR IVLRSTMGAI DVYLVSQFEE KFEEMNAVNT MAQLPAASNP EFLENSALQM 360 VPEHSQHHEI EHELHESNSM NNDLNAQQDC MGGMMKIVPS DVDTDADYWL LSETGVSITD 420 MWSTPSEQWD GNPDDFINVT VSTPRPETPA GVAEPPNLIN DQRSTSVNQQ N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MSGGRGAGNR PTQPPAQIFH PLKHNLPFSS SRPPFVSPDE YHRFSPARNH RDATAEVAEA  60
IVIKTPLKRK AVHDDNDVAE SAEWINSPGQ AEVDSNSLLT PVSGKGGRNY GRSKVAKFYK  120
SVPQTPMSNT GSPSNNLLTP ATTCRYDSSL GLLTKKFINL LKTAQDGILD LNKAAETLEV  180
QKRRIYDITN VLEGIGLIEK KLKNRIRWKG LDDLRSGDFE DGVSVLQSEV EKLGLQERNL  240
DAHISEMQQQ IRELSENENS SKWLYVTEDD IKSLPCFHNE TLIAIKAPHG TTLEVPDPDE  300
AGEYPQRRYR IVLRSTMGAI DVYLVSQFEE KFEEMNAVNT MAQLPAASNP EFLENSALQM  360
VPEHSQHHEI EHELHESNSM NNDLNAQQDC MGGMMKIVPS DVDTDADYWL LSETGVSITD  420
MWSTPSEQWD GNPDDFINVT VSTPRPETPA GVAEPPNLIN DQRSTSVNQQ N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-131	E2F/DP family protein