PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020682962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23315.3 Da PI: 6.5859 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_020682962.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLMHLPVTDRSEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVSLQAQL 101 7*************************89******************************************************************* PP DUF260 95 allke 99 a+lk+ XP_020682962.1 102 ASLKA 106 99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MTGLGSPCGA CKFLRRKCVR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLMHLPVTD 60 RSEAAVTISY EAQARLQDPI YGCVAHIFAL QQQVVSLQAQ LASLKAHQAA QGVGNNNIIG 120 LTEASIAQEA GKAYNRYASY QQDVQGLIMS QAIDERTNQP SVSNHMMNCE SSSQEDLISM 180 SVEDESFCGM RAAYNYHDLE DLQSIAFAYL HRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-54 | LBD family protein |