PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682928.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 555aa MW: 59478.6 Da PI: 6.9475

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.2e-31	304	362	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_020682928.1 304 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 362 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MENKGGGGLT LEPNPFRAIK RRQSMDSAAG FEFPISLACR EAAPSSHDDQ KPAGEMDFFS 60 SEKKARVSTP VGIPLDLMIK KEDLTINTGL HLANTGSDQS TLDEGMSLNE EEKEGKTELV 120 AMQSELGRMT EENQRLRGML SQVTNNYNAL HMHFMALMQQ RNQNNKSNNI TQSQEAVSDD 180 QLRKQENVGV AIVPRQFIDL GLAAGDADEP STHSSTDGGS QDPSSQSQAN KEKSANSKEM 240 MVFEREGNGF VREESPENSS HVWAPNNQPK VGGVGLKPAE QAQEATMRKA RVSVRARSEA 300 PMIADGCQWR KYGQKMAKGN PCPRAYYRCT MATGCPVRKQ VQRCAEDRSI LITTYEGNHN 360 HPLPPPAMAM ASTTSAAASM LLSGSMPSND GLMNSNVLAR TILPCSSSMA TISASAPFPT 420 VTLDLTQSPT PLQYQQRPPP PQFHLPPTQP AQPSSLPHIF GQAIYNQSKF SGLQMSSAEV 480 ARPPPPHNLA DSVSAATAAI TADPNFTAAL AAAITSIIGG THQAGSSSNS GAVNNIVKVN 540 NGSSGKPASW TFPSS

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MENKGGGGLT LEPNPFRAIK RRQSMDSAAG FEFPISLACR EAAPSSHDDQ KPAGEMDFFS  60
SEKKARVSTP VGIPLDLMIK KEDLTINTGL HLANTGSDQS TLDEGMSLNE EEKEGKTELV  120
AMQSELGRMT EENQRLRGML SQVTNNYNAL HMHFMALMQQ RNQNNKSNNI TQSQEAVSDD  180
QLRKQENVGV AIVPRQFIDL GLAAGDADEP STHSSTDGGS QDPSSQSQAN KEKSANSKEM  240
MVFEREGNGF VREESPENSS HVWAPNNQPK VGGVGLKPAE QAQEATMRKA RVSVRARSEA  300
PMIADGCQWR KYGQKMAKGN PCPRAYYRCT MATGCPVRKQ VQRCAEDRSI LITTYEGNHN  360
HPLPPPAMAM ASTTSAAASM LLSGSMPSND GLMNSNVLAR TILPCSSSMA TISASAPFPT  420
VTLDLTQSPT PLQYQQRPPP PQFHLPPTQP AQPSSLPHIF GQAIYNQSKF SGLQMSSAEV  480
ARPPPPHNLA DSVSAATAAI TADPNFTAAL AAAITSIIGG THQAGSSSNS GAVNNIVKVN  540
NGSSGKPASW TFPSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	22	RAIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	1e-123	WRKY family protein