PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682695.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 821aa MW: 90596.3 Da PI: 8.5427

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.2	3.7e-19	360	459	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_020682695.1 360 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 450 89************************654..445667***********99899999999.*******************987.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ XP_020682695.1 451 GKLVMGFRK 459 777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF 60 HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL 120 STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM 180 AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGENNLI TMRKVMASDP STSCFSGIKF 240 EAHQISHGSS SVNSKGDSRS LLMGLSAPFS PINGTNDPSQ VSTTQPQRQV ASSTLSKQCY 300 PNSLSSIDST SESPAHMRNG KGRFDPGARS HLLPRYWPRI TDQELQQISG DSNSAITPLF 360 EKMLSASDAG RIGRLVLPKK CAEAYFPLIS QPEGLPLKMQ DASGKEWVFQ FRFWPNNNSR 420 MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA ANVSNNEQDI QSAKDGNGGS 480 TPSDVKPNTV DYIAIPPLLP HKGNKESRNQ TNAADKASWS KNDKSEFILK DVCAPKFDIA 540 LCRRKGSFLI SKSKRLRIES AESIELKLTW EEAQVLLRPA LNFASNVVIV EGHDFEEYKE 600 APVLGLPMYF AKNHEGSSCS AVQESSAEIT HLLPSRAGSC KRSNVIFENE NENVNENAEV 660 IDGLDTLANL AILGEGKSQP SSSQPTTKHP RHRPGCTCIV CIQPPSGKGP KHKQTCDCNV 720 CLTVKRRFRT LMLRREKRQS EKEAVISWPP PYPLLQNSGA NSSPQMPIEN NVVVNAESER 780 KRTAPSPIKT QIDLNLQPER EEEPSPVANS VNSMNLLTPN I

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF  60
HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL  120
STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM  180
AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGENNLI TMRKVMASDP STSCFSGIKF  240
EAHQISHGSS SVNSKGDSRS LLMGLSAPFS PINGTNDPSQ VSTTQPQRQV ASSTLSKQCY  300
PNSLSSIDST SESPAHMRNG KGRFDPGARS HLLPRYWPRI TDQELQQISG DSNSAITPLF  360
EKMLSASDAG RIGRLVLPKK CAEAYFPLIS QPEGLPLKMQ DASGKEWVFQ FRFWPNNNSR  420
MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA ANVSNNEQDI QSAKDGNGGS  480
TPSDVKPNTV DYIAIPPLLP HKGNKESRNQ TNAADKASWS KNDKSEFILK DVCAPKFDIA  540
LCRRKGSFLI SKSKRLRIES AESIELKLTW EEAQVLLRPA LNFASNVVIV EGHDFEEYKE  600
APVLGLPMYF AKNHEGSSCS AVQESSAEIT HLLPSRAGSC KRSNVIFENE NENVNENAEV  660
IDGLDTLANL AILGEGKSQP SSSQPTTKHP RHRPGCTCIV CIQPPSGKGP KHKQTCDCNV  720
CLTVKRRFRT LMLRREKRQS EKEAVISWPP PYPLLQNSGA NSSPQMPIEN NVVVNAESER  780
KRTAPSPIKT QIDLNLQPER EEEPSPVANS VNSMNLLTPN I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	725	738	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-119	B3 family protein