PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682623.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92450.5 Da    PI: 5.8907
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_020682623.1 19 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilsKIEPKQIKVWFQNRRCREKQ 77
                    5678*****************************************************97 PP
2START154.11.2e-481643712204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++kka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  ++ ++v +l d+   W ++++++++l+v  +g  g ++  
  XP_020682623.1 164 IAEETLAEFLKKATGTAIDWVQMVGMKPGPDSIGIIAISRNCSGLAARACGLVSLEPKKVVDILKDRL-SWYRDCRSIDVLKVFPTGncGNIEIL 257
                     68999*****************************************************6666666666.************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+  Rdf+++Ry+ +l++g++vi+++S+++ +       +s+++Rae+lpSg+li+p+++g+  +++v+hvdl++++++++lr+l+
  XP_020682623.1 258 YMQTYAPTTLALaRDFWTLRYSTSLEDGSLVICERSLTPSTGGLAeptNSNFIRAEMLPSGYLIRPCEGGGAMIHIVDHVDLDASTVPEVLRPLY 352
                     ***********99**************************9865333449********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s ++ +++++ a+l++ +
  XP_020682623.1 353 ESPQMLAQRMTIAALHHIR 371
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    
MAMLVSGKDG GKALMDSGKY VRYTPEQVEA LERVYNECPK PSSLRRQQLI RECPILSKIE  60
PKQIKVWFQN RRCREKQRKE ASSLQSVNRK LTAMNKLLME ENDRLQKQVS QLVYDNSYMH  120
QQLRNASLAN ADASESMILG SQLQNPISQP SLRDASNSDS LLAIAEETLA EFLKKATGTA  180
IDWVQMVGMK PGPDSIGIIA ISRNCSGLAA RACGLVSLEP KKVVDILKDR LSWYRDCRSI  240
DVLKVFPTGN CGNIEILYMQ TYAPTTLALA RDFWTLRYST SLEDGSLVIC ERSLTPSTGG  300
LAEPTNSNFI RAEMLPSGYL IRPCEGGGAM IHIVDHVDLD ASTVPEVLRP LYESPQMLAQ  360
RMTIAALHHI RQIGYETSGE ASYDGGRQPA VLRTFSQRLS RGFNDAINGF SDDGWSLLGY  420
DGGEDVTINI NSSPSKLFGS HSRSAKFSSL GGSILCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADSIVDAY STASLRGCPN AFPGFFDNSS FAANHVIIPL AHTVENEEFL EVIRLESQTL  540
NQDDVLSRDI YLLQLCEGID ENAVGACAQL IFSPTDPSFA DDAPLLPSGF RVIPLDVKAD  600
STAATKTLDL ASTLEVGSGG ASRIASDTTT SDMRSVLTIA FQFIFENHLQ ESVVAMARQY  660
IRSIVASVQR VAMAITNSRL GIELGMKHPL GSPEAHTLAR WISSSYRFYT GLDLMKTDSQ  720
CADSLLKLLW HYSDAIMCCS LKVSPSLTFA NQAGLDMLET TLVALQDITL ENLLDDAGRK  780
VLSSEFPKLM QQGFAHLPAG VCISSMGRPA SYEQAMAWKV LDECSSHHCL AFMFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein