PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020682529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 50089.2 Da PI: 5.9389 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 237.3 | 6.7e-73 | 118 | 470 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl++A+av+ gdl+ ++Larl+ + ++g+p++R+a++f+ AL + l + +p + s + + ++aa+k+fs++sPi++f+ + XP_020682529.1 118 DLLLRAAHAVEIGDLNSSLSILARLNFIlPCSTGSPLHRAAFHFKDALLSLLPI----ADRPIPEPPLSAIELVLRIAAHKAFSDLSPIPQFTSF 208 69*************************9889999***************99886....55667777788788*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 taNq++le+v+ + +H iDfd++ G+QW ++ + La+R+ +pp lRiT+v+s +++ e+ +++L++fA+ +g+++ +++ rl+ XP_020682529.1 209 TANQTLLESVDAAPSLHLIDFDLGLGGQWSSFAHDLAARSraarLPPPPLRITAVVS---EETAETALAADNLRDFARGIGLRLTVEFV---RLS 297 *************************************99966666699*********...468899999*******************8...777 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleak...lpre 278 +l r+ pgEa+aV l ++rl +vL++v+++ ++vv vv+ e + + +sF +rf+ leyy+a ++ ++a +++ XP_020682529.1 298 AL--AGVRLAPGEAVAVVLTPTIFRLI-----G----VSVLRFVRRVAARVVLVVDGEGYCgSVGSFRRRFAGGLEYYAAAMEVVDAWaaaAGAG 381 77..67788*****************8.....3....46**********************7778**************9988775541115555 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+ + +Er+l++++i +va++ a+ ++ Wre + +aG+ ++lse++++qa+ llr+ +++g++v ++g+lvl Wk+r+L ++SaW XP_020682529.1 382 EEAVRRIERALFRPRIFAAVAAAAAA-------VGDWREVMASAGMVVAELSEFTESQAEWLLRRAPVEGFHVARREGALVLSWKGRELSATSAW 469 699999*****************998.......99************************************************************ PP GRAS 374 r 374 r XP_020682529.1 470 R 470 8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence |
MKITKSSTGG DSQAALHHLT KPIDSSPLYE PTSVLDPHIT SSPSAAAAAA PASGGACPAP 60 SLPWDSASIP LALTSSASDD WSDPLSFLLA DMDDPCSFFP DLSHPTPPPP EAESSHLDLL 120 LRAAHAVEIG DLNSSLSILA RLNFILPCST GSPLHRAAFH FKDALLSLLP IADRPIPEPP 180 LSAIELVLRI AAHKAFSDLS PIPQFTSFTA NQTLLESVDA APSLHLIDFD LGLGGQWSSF 240 AHDLAARSRA ARLPPPPLRI TAVVSEETAE TALAADNLRD FARGIGLRLT VEFVRLSALA 300 GVRLAPGEAV AVVLTPTIFR LIGVSVLRFV RRVAARVVLV VDGEGYCGSV GSFRRRFAGG 360 LEYYAAAMEV VDAWAAAAGA GEEAVRRIER ALFRPRIFAA VAAAAAAVGD WREVMASAGM 420 VVAELSEFTE SQAEWLLRRA PVEGFHVARR EGALVLSWKG RELSATSAWR CR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-55 | GRAS family protein |