PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682523.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 379aa MW: 42025 Da PI: 4.6596

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.3	1.9e-16	18	125	10	127
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 tdee++ +L ++ +g++++ ++i+ev+ ++v Pwd p e +wy ++ +d+ +++++++ +a++ gyW++ +++++ ++ + g k+ XP_020682523.1 18 TDEEVL-LFLGERKAGDPIPS-NIITEVNPFSVRPWDSP------EGKWYLYHFEDECSSNQRNTFQAIQIGYWRSMAY-RTIYT-DNVAAGRKT 102 899998.8999999***99.89**********9......458*****9999999999****8866.99999.9999* PP NAM 105 tLvfykgrapkgektdWvmheyr 127 t fy g++p g++t W+m +y+ XP_020682523.1 103 TWEFYIGQEPLGNRTGWLMYDYQ 125 ********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MCPPASISHR LDINVSSTDE EVLLFLGERK AGDPIPSNII TEVNPFSVRP WDSPEGKWYL 60 YHFEDECSSN QRNTFQAIQI GYWRSMAYRT IYTDNVAAGR KTTWEFYIGQ EPLGNRTGWL 120 MYDYQRTHKE CQGLNAAQDC SSMCRVFLQE DQRAIIGDQK PPDTEHCSPV SSDNADGVNA 180 ESMLLRFLEQ EEINSPTNTA NQSEVAAPEQ RHDGSSPDLL TSDSAGDLNA YVEKGEYLEL 240 EDLYDLESTS SSSDDSSLIS SNSDDRFDAE ALLRDLKNES CRNIKGSNTI NNSHSEDDEP 300 RLANSSPPPP LPHECSPKTS SPVYKSNPTT SVSVSCLRGH PKRTHSGSSQ SSSSSNGSGS 360 KSVRRISKLG KKYCCFGPF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MCPPASISHR LDINVSSTDE EVLLFLGERK AGDPIPSNII TEVNPFSVRP WDSPEGKWYL  60
YHFEDECSSN QRNTFQAIQI GYWRSMAYRT IYTDNVAAGR KTTWEFYIGQ EPLGNRTGWL  120
MYDYQRTHKE CQGLNAAQDC SSMCRVFLQE DQRAIIGDQK PPDTEHCSPV SSDNADGVNA  180
ESMLLRFLEQ EEINSPTNTA NQSEVAAPEQ RHDGSSPDLL TSDSAGDLNA YVEKGEYLEL  240
EDLYDLESTS SSSDDSSLIS SNSDDRFDAE ALLRDLKNES CRNIKGSNTI NNSHSEDDEP  300
RLANSSPPPP LPHECSPKTS SPVYKSNPTT SVSVSCLRGH PKRTHSGSSQ SSSSSNGSGS  360
KSVRRISKLG KKYCCFGPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-18	NAC family protein