PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682460.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 330aa MW: 37492.4 Da PI: 8.1285

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682460.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	59	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed+ll d ++ + g+W++ +++ g++R++k+c++rw++yl XP_020682460.2 59 RGAWTEQEDKLLSDFIESHSIGRWRSLPAKAGLNRCGKSCRLRWLNYL 106 89********************************************97 PP
2	Myb_DNA-binding	53.4	5.8e-17	112	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl XP_020682460.2 112 RGNITYEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 157 7899****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MAELSSSDHP DVSDDKYYLD SINSQEFKLS NVRRQNGVVL LELLGWLKKV CLPKGELRRG 60 AWTEQEDKLL SDFIESHSIG RWRSLPAKAG LNRCGKSCRL RWLNYLRPGI KRGNITYEEE 120 DLIIRLHKLL GNRWSLIAGR IPGRTDNEIK NYWNTYLKKK VAIDASESQS SSKTITTTTT 180 ITSTTMHLSI KKSGNQNANK RMNEGSETSM VKSKIIKCSN DLPTYETEDL NKNNSFSHEE 240 HLTMKLQGHE QVCLPASASS DFGFGLELSF GELSNSSVFS DYEWKDVKSI ASPSVIGDVF 300 NSKRMERNEK MHPFIAEVEW ESLIKSCEAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-55	MYB family protein