PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020682445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28810.6 Da PI: 6.5379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp ++r+r++lg+f+taeeAa+ ++ a+ ++g XP_020682445.1 105 RFRGVRRRP-WGKWAAEIRDP---NRRRRIWLGTFDTAEEAAAVYDSAAVMIKG 154 79*******.**********8...335*********************987776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MEISRPSHRL DFSGLPVKYS EYFSTIKKKT MVAGKPKRID RRVVRIFFTD ADATDSSSSD 60 EEVVNPAPRR VKRQVYEIGF QVGSVSPRAN TTTGAASPET NYSKRFRGVR RRPWGKWAAE 120 IRDPNRRRRI WLGTFDTAEE AAAVYDSAAV MIKGERAVTN FPLWKVPSPA LIDCEAEPEK 180 IVHEPSCPFS SPTSVLPCAV EQTPFDSFCY GDVDVFGVSV GPPLYLTEFC MPKRQYWEVD 240 LDDFSAEDFS MEIVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 129 | RRRPWGKWAAEIRDPNRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-28 | ERF family protein |