PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682060.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 647aa    MW: 68922.6 Da    PI: 5.0926
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.12.9e-1372606321374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++ a+ l+ ++  las++  +m+++a yf+e+ a++++r        l+p+++ + +s+ +   +  f+e +P+lkf+h
  XP_020682060.1 260 LVHALMACAEAVNEENFKVADVLVRQITVLASSQSGAMRKVAGYFAEGFARKIYR--------LHPQQDCSLDSAFSDILQMHFYESCPYLKFAH 346
                     689****************************************************........77888776666666666666************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La++A++++v+fe++ +va++l+dle
  XP_020682060.1 347 FTANQAILEAFAGCRRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPDNTDALQQVGWKLAQLADTIHVDFEYRGFVANSLADLE 441
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..l 275
                     + +L++ +         E++a+n+v++lhrll+++++le+    vL +++ ++P++v+vveqea+hn+++F+erf+eal+yys++fdsle +  +
  XP_020682060.1 442 PFMLETLSpasggsaePEVVAINSVFELHRLLARPGALEK----VLATIRAVKPRIVTVVEQEANHNAGPFMERFTEALHYYSTMFDSLEGGagA 532
                     ****7665577888889***********************....*********************************************766114 PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     + e+++++ +++++lgr+i+nvvaceg+er+erhetl +Wr r++ aGF+pv+++++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL++
  XP_020682060.1 533 AGEAQQDQLMSEVYLGRQICNVVACEGSERTERHETLTQWRTRMGGAGFEPVHIGSNAFKQASMLLALFAgGDGYRVEEKEGCLTLGWHTRPLIA 627
                     5566******************************************************************************************* PP

            GRAS 370 vSaWr 374
                     +SaWr
  XP_020682060.1 628 TSAWR 632
                     ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    
MKREHLESVG GRGIGGYAPA APGMAGTGKG KMMGLDEEAD GGIDELLAAF GYNVRSSDMA  60
GVAEKLEQLE MAMGGSSAHD DALLIHLASD TVHYNPSDLS SWLESMLSEL SAPPPQLPQA  120
IHPNSSGYNL PQAPASAHSS TAFFDPADAL TTTESSTVTS VDFPAQPPPV VFPDFAVRQS  180
GSGGNRVVYG SEPQIDSGTR DRKRMKTSSS SSSSRGGSGG GVIVQSSPTI GSLLAPASGT  240
EVASALPVVM VDTQEVGIRL VHALMACAEA VNEENFKVAD VLVRQITVLA SSQSGAMRKV  300
AGYFAEGFAR KIYRLHPQQD CSLDSAFSDI LQMHFYESCP YLKFAHFTAN QAILEAFAGC  360
RRVHVIDFSM KQGMQWPALM QALALRPGGP PSFRLTGIGP PQPDNTDALQ QVGWKLAQLA  420
DTIHVDFEYR GFVANSLADL EPFMLETLSP ASGGSAEPEV VAINSVFELH RLLARPGALE  480
KVLATIRAVK PRIVTVVEQE ANHNAGPFME RFTEALHYYS TMFDSLEGGA GAAGEAQQDQ  540
LMSEVYLGRQ ICNVVACEGS ERTERHETLT QWRTRMGGAG FEPVHIGSNA FKQASMLLAL  600
FAGGDGYRVE EKEGCLTLGW HTRPLIATSA WRVAGATDST SAAADAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein