PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681925.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GeBP

Protein Properties

Length: 447aa MW: 48449 Da PI: 5.8605

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	80.7	2.2e-25	248	343	3	97
DUF573 3 fqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +r+ws+ De++lLq ++d ++++g+s + ++ + + v++s+s+ v+ +q+ +KirrLK+K+++ kk+k+ ++p++s+ hd +f+lskkiW XP_020681925.1 248 TRRIWSKADELALLQCILDHnEHHHGTSTQVPVESLLKSVNDSLSSSVTLTQMNDKIRRLKQKYNTIIKKVKDPNNPNISNVHDAAAFDLSKKIW 342 589**************945567878888************************************************************** PP DUF573 97 g 97 g XP_020681925.1 343 G 343 9 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MAKKSKEKLP PPPSPTPPPS SSDEEDSPPP AISPVKKPAA ASTTAVLQKH PEPSPKFFSG 60 EKAEDEESSE SEEESTDEES SEDSGAAAVK ANPLPPPLPT DSRNADVKQG FNTSPLSDTE 120 SEDGEEVDSS SESEQQPLPP PPQEAANGEG KQAATPISGS DSASEDESGS SSDSDAVAPP 180 FRVSSRNAAD PSLKPLSSKP MGSPVQPADK SPSSRKRSTT TPAQISEKKR KTADIIGEEA 240 VQEKKEITRR IWSKADELAL LQCILDHNEH HHGTSTQVPV ESLLKSVNDS LSSSVTLTQM 300 NDKIRRLKQK YNTIIKKVKD PNNPNISNVH DAAAFDLSKK IWGPRKDEPV FPENNLKPEK 360 AKKVKEIIKE DKGKANHLAV EYPFLRWHAK NDHANIASVV QSHIPTAEAK KLEGSCKKLE 420 ITEIQLHMRK MKLLASSLKL IEDALAK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MAKKSKEKLP PPPSPTPPPS SSDEEDSPPP AISPVKKPAA ASTTAVLQKH PEPSPKFFSG  60
EKAEDEESSE SEEESTDEES SEDSGAAAVK ANPLPPPLPT DSRNADVKQG FNTSPLSDTE  120
SEDGEEVDSS SESEQQPLPP PPQEAANGEG KQAATPISGS DSASEDESGS SSDSDAVAPP  180
FRVSSRNAAD PSLKPLSSKP MGSPVQPADK SPSSRKRSTT TPAQISEKKR KTADIIGEEA  240
VQEKKEITRR IWSKADELAL LQCILDHNEH HHGTSTQVPV ESLLKSVNDS LSSSVTLTQM  300
NDKIRRLKQK YNTIIKKVKD PNNPNISNVH DAAAFDLSKK IWGPRKDEPV FPENNLKPEK  360
AKKVKEIIKE DKGKANHLAV EYPFLRWHAK NDHANIASVV QSHIPTAEAK KLEGSCKKLE  420
ITEIQLHMRK MKLLASSLKL IEDALAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	231	RKRSTTTPAQISEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	9e-14	GeBP family protein