PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020681746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 403aa MW: 45415.9 Da PI: 7.012 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.6 | 2.6e-114 | 53 | 402 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLl+cAe +++ d+++a+++++ l +++s +gd+ Rl+++ft AL+ rl+ lpps+ ++ ++ f++++P+l+fshlt XP_020681746.1 53 RLLLHCAELIHHADFAAARHAISILTTTSSATGDAADRLTHHFTSALSLRLHL--------LPPSPHDP-------NFILSFNQLTPFLRFSHLT 132 79**************************************************8........78888762.......344459************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 aNqaIleav+g++ +Hi+Dfd ++GlQWp+Llqa+a+R+ +pp+++iTg g + l++t +rL++fA++lg+ f+f++l + + XP_020681746.1 133 ANQAILEAVDGHRSIHILDFDTGHGLQWPPLLQAIADRShfPNPPTIQITGTGT----DPSLLSQTSRRLQSFADSLGLCFHFHPLCISP---TT 220 ***************************************88889**********....9**************************95555...55 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +++ + gE laVn+ + lh+l ++++ e +++L ++k+++P vv+v+e+ea+h+s+ Fl+rf+eal+yysa+f+slea+lp+ s+er++v XP_020681746.1 221 SFSFQANGGEILAVNCTMFLHKLIKDDGLDEL--KQFLLAIKGMNPAVVTVAEKEAKHSSPLFLQRFAEALSYYSAVFESLEATLPPSSRERMVV 313 55888999****************87776666..9************************************************************ PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 E++++grei+++va eg+ r+erhe++e+W++ +++aGF pls++a +qa+lllr ++ s+gy+ve +gs++lgWk++pL+svS+W XP_020681746.1 314 EKMWIGREIEDIVAGEGEGRKERHERFERWENLMKNAGFLIKPLSYFALAQARLLLRLHYpSEGYMVEMMKGSMFLGWKSKPLFSVSSW 402 ***************************************************************************************** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence |
MLAISSPPFD QMLTSFTSHE EDHNQLQQQQ QHHHLLLHPR PEPASNRSVQ SHRLLLHCAE 60 LIHHADFAAA RHAISILTTT SSATGDAADR LTHHFTSALS LRLHLLPPSP HDPNFILSFN 120 QLTPFLRFSH LTANQAILEA VDGHRSIHIL DFDTGHGLQW PPLLQAIADR SHFPNPPTIQ 180 ITGTGTDPSL LSQTSRRLQS FADSLGLCFH FHPLCISPTT SFSFQANGGE ILAVNCTMFL 240 HKLIKDDGLD ELKQFLLAIK GMNPAVVTVA EKEAKHSSPL FLQRFAEALS YYSAVFESLE 300 ATLPPSSRER MVVEKMWIGR EIEDIVAGEG EGRKERHERF ERWENLMKNA GFLIKPLSYF 360 ALAQARLLLR LHYPSEGYMV EMMKGSMFLG WKSKPLFSVS SWF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55580.1 | 2e-85 | GRAS family protein |