PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681619.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 336aa MW: 38188.5 Da PI: 5.3611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++++ G g+W+t ++ g+ R++k+c++rw +yl XP_020681619.1 14 KGPWTPEEDQKLINYIQKNGHGSWRTLPKNAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54	3.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia+ ++ gRt++++k++w+++ XP_020681619.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAAQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLINYIQ KNGHGSWRTL PKNAGLSRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAAQLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHFPRL DLLDLSSLLN PMLYNPGQTD LSRLLGIEPL VNSELLRFAS NLLQSQCQNT 180 NLVQVQEQQG PNLSTSQHDL ISSYNQLQNL VQSNSQNVDL DSSEQFRWQS NRANVCNLGD 240 NFMPAATDNN VSYNDNMGQF MVPNFVQEDG QAFDFQIPYN MTHDSVLSTP SSSPTLNNSN 300 CSTYLNSSTE HDQDSYSSAN LFNFEIPDLL DVSDFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	5e-93	MYB family protein