PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681598.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 705aa MW: 81395.8 Da PI: 7.3873

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.7	2.2e-24	71	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrk + +++ ++g+i +r++ Cs+eg+r+e++++ ++++ra +rt+C a++++k ++d+ w ++k +HnH+la XP_020681598.1 71 EFYNSYAKRKGFSVRKGHLSRR-KDGSIRDRHYLCSNEGTRQEHRTH--ITKKPRAIERTNCLARIELKVTRDNAWTISKYIDDHNHPLA 157 6***************9997.8899************9887..999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MASEILKLKE SISAGNAISS ASDTSRELDG GSGIFVSKEV KLTDGILAQE GNSQFEPKVG 60 MLFNSEEQAY EFYNSYAKRK GFSVRKGHLS RRKDGSIRDR HYLCSNEGTR QEHRTHITKK 120 PRAIERTNCL ARIELKVTRD NAWTISKYID DHNHPLASPN KIHMLRSHRS KFPPHRAFIS 180 ESDYMGIKPV QTCGGQVVDA RCAESAVFLY KNQSCNLLQS NRTRDLEKGD PQFILDFLKA 240 KQSEDPTFCY AVQLDEKDRP TNFFWTDARS IFDYSYFGDS ILFDTTYRVS IYDIPFAPFI 300 GINHHKQIVV FGAALLLDET IESFYWLFKT FLEAMSGKQP KTILTDQCDA MSKAIVMSMP 360 ETYHQFCLWH ILENAPKIIP HIFSRDPSFE RDFENCLCEG SSEVDFYKAW ENLISKYGLM 420 NNRWLEDLYA AREKWSLVYC KKSFCATMTT KEWRDTMNNN FKMLFYRKLP PSKFMVQYHR 480 ALNQLREKEL CEDHESRVCK SALLADIPTL VEAAEYYTRA IYKDFEDEYK SQLACLCEPV 540 GIERNVYTFR VSIPQKRSFG LVEFDSSNVS VACSCNKFES MGILCMHALK VLNYNNILHL 600 PSRYLLKRWS KHAKDGVAAD QHLNAEDQTV LDLHYFQVVR KAIAVVVKSV FSKEALDLVE 660 RRLDRCMQET ENTLPNATPD KQLEDVIIVH NLQQSNAVEA NNLLF

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MASEILKLKE SISAGNAISS ASDTSRELDG GSGIFVSKEV KLTDGILAQE GNSQFEPKVG  60
MLFNSEEQAY EFYNSYAKRK GFSVRKGHLS RRKDGSIRDR HYLCSNEGTR QEHRTHITKK  120
PRAIERTNCL ARIELKVTRD NAWTISKYID DHNHPLASPN KIHMLRSHRS KFPPHRAFIS  180
ESDYMGIKPV QTCGGQVVDA RCAESAVFLY KNQSCNLLQS NRTRDLEKGD PQFILDFLKA  240
KQSEDPTFCY AVQLDEKDRP TNFFWTDARS IFDYSYFGDS ILFDTTYRVS IYDIPFAPFI  300
GINHHKQIVV FGAALLLDET IESFYWLFKT FLEAMSGKQP KTILTDQCDA MSKAIVMSMP  360
ETYHQFCLWH ILENAPKIIP HIFSRDPSFE RDFENCLCEG SSEVDFYKAW ENLISKYGLM  420
NNRWLEDLYA AREKWSLVYC KKSFCATMTT KEWRDTMNNN FKMLFYRKLP PSKFMVQYHR  480
ALNQLREKEL CEDHESRVCK SALLADIPTL VEAAEYYTRA IYKDFEDEYK SQLACLCEPV  540
GIERNVYTFR VSIPQKRSFG LVEFDSSNVS VACSCNKFES MGILCMHALK VLNYNNILHL  600
PSRYLLKRWS KHAKDGVAAD QHLNAEDQTV LDLHYFQVVR KAIAVVVKSV FSKEALDLVE  660
RRLDRCMQET ENTLPNATPD KQLEDVIIVH NLQQSNAVEA NNLLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-124	FAR1 family protein