PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681580.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 881aa MW: 97192.3 Da PI: 8.3278

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.3e-19	367	466	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_020681580.1 367 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 459 89************************555567778***********99899999999.*******************987.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 +++++++ XP_020681580.1 460 FLMGFRK 466 6777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MSSSSAAAAT ATATGVFKIC FNAHCKEALA EQTRRKGWRL RSGEFAELCD RCHSTFDQGN 60 FCETFHSDAA GWRKCESCAK RIHCGCIVSI PAYMLLDVGG VECMACVRKA YSAVPNQVCS 120 PSVILSPRVS EKSKEFPIKS WNQVSSSFPG QWRHPSNIWS SSSIQSDLHQ RLSYEFDRPS 180 NSEKLMAGAR SAVSAQEKKP DDLPGRIGLG GLNHVPRDRY GENCPTSTRR GMMSDACSAS 240 SSGVNFETHQ NLSGKPSSSI IPKGESTSLL LGLTAPLSSM NGTSDPIRVT TNHAQLQSVP 300 SPLSKQFYPN PLNSSHSGES QAQTRNGRGR FDPRARSHLL PRYWPRITDQ ELQQISGDSN 360 SVVTPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKMQDAS GKEWVFQFRF 420 WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKF LMGFRKASTS SCTEQDNQAA 480 QAGNGSSASS DVKSNAMDFI TNLPLRPHKG NIESRNQTEM ADKESWSKNE KAGFIQKVGS 540 SPKLSHIPCK KKNSALGSKS KRLRIENEDS IELNLTWEEA QVLIRSAPDD FSSVTSVSVE 600 GHEFEEFEEG PVLGMPTYFG KNQDGDINNR WVQCENCFKW RRLPLDALLH HRWTCSDNKW 660 DPERCSCSAP QEISTEIRHL LPMKSGSSKK SKLKFENENF EVSDGLDTLA NLAILGESES 720 LPASSQPTTK HPRHRPGCTC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF QTLMLRREKR 780 QSEKEAENTA TPKKQQNSTH PTQVSPGTPP SPSAPVIHNS GVSPPMTHAN GLVDDELERK 840 RATPSPIKTQ IDLNIQPERE EEPSPAAVPG SMSRAFQNDL D

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MSSSSAAAAT ATATGVFKIC FNAHCKEALA EQTRRKGWRL RSGEFAELCD RCHSTFDQGN  60
FCETFHSDAA GWRKCESCAK RIHCGCIVSI PAYMLLDVGG VECMACVRKA YSAVPNQVCS  120
PSVILSPRVS EKSKEFPIKS WNQVSSSFPG QWRHPSNIWS SSSIQSDLHQ RLSYEFDRPS  180
NSEKLMAGAR SAVSAQEKKP DDLPGRIGLG GLNHVPRDRY GENCPTSTRR GMMSDACSAS  240
SSGVNFETHQ NLSGKPSSSI IPKGESTSLL LGLTAPLSSM NGTSDPIRVT TNHAQLQSVP  300
SPLSKQFYPN PLNSSHSGES QAQTRNGRGR FDPRARSHLL PRYWPRITDQ ELQQISGDSN  360
SVVTPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKMQDAS GKEWVFQFRF  420
WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKF LMGFRKASTS SCTEQDNQAA  480
QAGNGSSASS DVKSNAMDFI TNLPLRPHKG NIESRNQTEM ADKESWSKNE KAGFIQKVGS  540
SPKLSHIPCK KKNSALGSKS KRLRIENEDS IELNLTWEEA QVLIRSAPDD FSSVTSVSVE  600
GHEFEEFEEG PVLGMPTYFG KNQDGDINNR WVQCENCFKW RRLPLDALLH HRWTCSDNKW  660
DPERCSCSAP QEISTEIRHL LPMKSGSSKK SKLKFENENF EVSDGLDTLA NLAILGESES  720
LPASSQPTTK HPRHRPGCTC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF QTLMLRREKR  780
QSEKEAENTA TPKKQQNSTH PTQVSPGTPP SPSAPVIHNS GVSPPMTHAN GLVDDELERK  840
RATPSPIKTQ IDLNIQPERE EEPSPAAVPG SMSRAFQNDL D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	767	780	KRRFQTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-138	B3 family protein