PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681579.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 882aa MW: 97320.4 Da PI: 8.3278

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.3e-19	367	466	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_020681579.1 367 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 459 89************************555567778***********99899999999.*******************987.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 +++++++ XP_020681579.1 460 FLMGFRK 466 6777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MSSSSAAAAT ATATGVFKIC FNAHCKEALA EQTRRKGWRL RSGEFAELCD RCHSTFDQGN 60 FCETFHSDAA GWRKCESCAK RIHCGCIVSI PAYMLLDVGG VECMACVRKA YSAVPNQVCS 120 PSVILSPRVS EKSKEFPIKS WNQVSSSFPG QWRHPSNIWS SSSIQSDLHQ RLSYEFDRPS 180 NSEKLMAGAR SAVSAQEKKP DDLPGRIGLG GLNHVPRDRY GENCPTSTRR GMMSDACSAS 240 SSGVNFETHQ NLSGKPSSSI IPKGESTSLL LGLTAPLSSM NGTSDPIRVT TNHAQLQSVP 300 SPLSKQFYPN PLNSSHSGES QAQTRNGRGR FDPRARSHLL PRYWPRITDQ ELQQISGDSN 360 SVVTPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKMQDAS GKEWVFQFRF 420 WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKF LMGFRKASTS SCTEQDNQAA 480 QAGNGSSASS DVKSNAMDFI TNLPLRPHKG NIESRNQTEM ADKESWSKNE KAGFIQKVGS 540 SPKLSHIPCK KKNSALGSKS KRLRIENEDS IELNLTWEEA QVLIRSAPDD FSSVTSVSVE 600 GHEFEEFEQE GPVLGMPTYF GKNQDGDINN RWVQCENCFK WRRLPLDALL HHRWTCSDNK 660 WDPERCSCSA PQEISTEIRH LLPMKSGSSK KSKLKFENEN FEVSDGLDTL ANLAILGESE 720 SLPASSQPTT KHPRHRPGCT CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FQTLMLRREK 780 RQSEKEAENT ATPKKQQNST HPTQVSPGTP PSPSAPVIHN SGVSPPMTHA NGLVDDELER 840 KRATPSPIKT QIDLNIQPER EEEPSPAAVP GSMSRAFQND LD

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MSSSSAAAAT ATATGVFKIC FNAHCKEALA EQTRRKGWRL RSGEFAELCD RCHSTFDQGN  60
FCETFHSDAA GWRKCESCAK RIHCGCIVSI PAYMLLDVGG VECMACVRKA YSAVPNQVCS  120
PSVILSPRVS EKSKEFPIKS WNQVSSSFPG QWRHPSNIWS SSSIQSDLHQ RLSYEFDRPS  180
NSEKLMAGAR SAVSAQEKKP DDLPGRIGLG GLNHVPRDRY GENCPTSTRR GMMSDACSAS  240
SSGVNFETHQ NLSGKPSSSI IPKGESTSLL LGLTAPLSSM NGTSDPIRVT TNHAQLQSVP  300
SPLSKQFYPN PLNSSHSGES QAQTRNGRGR FDPRARSHLL PRYWPRITDQ ELQQISGDSN  360
SVVTPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKMQDAS GKEWVFQFRF  420
WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKF LMGFRKASTS SCTEQDNQAA  480
QAGNGSSASS DVKSNAMDFI TNLPLRPHKG NIESRNQTEM ADKESWSKNE KAGFIQKVGS  540
SPKLSHIPCK KKNSALGSKS KRLRIENEDS IELNLTWEEA QVLIRSAPDD FSSVTSVSVE  600
GHEFEEFEQE GPVLGMPTYF GKNQDGDINN RWVQCENCFK WRRLPLDALL HHRWTCSDNK  660
WDPERCSCSA PQEISTEIRH LLPMKSGSSK KSKLKFENEN FEVSDGLDTL ANLAILGESE  720
SLPASSQPTT KHPRHRPGCT CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FQTLMLRREK  780
RQSEKEAENT ATPKKQQNST HPTQVSPGTP PSPSAPVIHN SGVSPPMTHA NGLVDDELER  840
KRATPSPIKT QIDLNIQPER EEEPSPAAVP GSMSRAFQND LD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	768	781	KRRFQTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-138	B3 family protein