PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020681501.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 284aa    MW: 30464 Da    PI: 8.9249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020681501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W  eE++ + +a + +       W++I + ++ g+tl+++k+++
   XP_020681501.1  5 AWNWEEEKAFENALAIHHETcsdWWEKITAAVP-GKTLEEIKHHY 48
                     7*****************99**99*********.**********9 PP
2Myb_DNA-binding43.95.5e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_020681501.1 114 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 158
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MVAEAWNWEE EKAFENALAI HHETCSDWWE KITAAVPGKT LEEIKHHYEF LVEDVGSIES  60
GRVPLPNYSS PSSSAAEGSD DGGGNGKKGG HSNGDSSHGG KGSRLDHERR KGIAWTEEEH  120
RLFLLGLDKY GKGDWRSISR NFVVTRTPTQ VASHAQKYFI RLNSMNKDRR RSSIHDITNV  180
NNGDISTSQG PITGQVNNFS SSPITNKAIK KPSLATASAP GIAIYGSSAI GQPLSPAIGT  240
PVAGPPAMAY AIRPAAGVVV ATGAPVRLAP TMAYPMHNAS AFHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-87MYB family protein