PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681485.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 1471aa MW: 165175 Da PI: 6.9729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	1438	1464	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg+sF+ s++ rH r+ H XP_020681485.1 1438 YKCKvaGCGMSFRFVSDFSRHRRKtgH 1464 9**********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1471 aa Download sequence
MTEADIPVWL KNLPLAPEYR PTETEFADPI AFISRIEREA ASFGICKVIP PVPKPSKKFV 60 LSNLNRSLSK SPELGDAAAA SAGPSSEAAV FTTRQQELGS RRGRPALPKQ VWQSGDVYTL 120 EQFEGKSKAF ARSQLGGFKE VTPLLVESLF WKAVTDKPIN IEYANDVPGS GFAVPEEPFR 180 YISWRRNRKR GLHRGKVNEE KCGFRLMSSG DNGQPQKSLG SGSDVEGMKG TSGWKLSNSR 240 WNLQVIARSP GSLTRFMPDD VPGVTSPMVY IGMLFSWFAW HVEDHELHSM NYLHMGSPKT 300 WYAVPQDHAV TLEEMVRFHG YGESVDRLAA FIMLGEKTTL LSPEVLVASG VPCCRLVQHP 360 GEFVVTFPRA YHVGFSHGFN CGEAANFATP EWLKVAKEAA IRRAAMNHLP MLSHQQLLYI 420 LTMSFVSRIP RTLISGVRSS RLRDRKKEER EILVKKAFLT DMMNENYLLC VLLEKESTSP 480 ILWEPYMLPA PCVVSQSYPS ISLKSQYFGD QNGCCTHNQQ MEINTQGESL DKVDDCHVEK 540 PIDEAIALRN TCSVIPLTEQ SYKNPIHADL ATSDLEAFED EDDLPVGLNV DSGSLACVAC 600 GNLGYPFMAV IQPSVEAAKM IFSIICEESH EKSDKSQCFI SSPCLQNDAC NSTAEERCPE 660 VAEQANLHAS CQLCPKSSIT SQHSREHDML KPIGSGSFLN YFPMNSLENK GEKLDATECQ 720 TKSNKCVSDS SANAFCSHGI RSCESVKKME GIWRLKTSKT VENGPGSDSW PFSEDESVKE 780 KVSVPKWDVS NILLRPRVFC LQHAIEVEEL LHNRGGVHIR VICHSDYLKF KAYAASIAEE 840 MRTELQLKDV PLENASQEDL NLINISIDDE EHQEDGKDWT SKLGVNLRYY VKFRKHSAST 900 QEQLPSALSG MFSSSSTVSI LSSLRWLRRK SRTPAKPQCI IAEKPHISAT ATGGVQTLKV 960 IDGDNIKAIQ VYQSRKKKTS DLAFKDHKHP VKELGSCNQN VAVIGKSEYV AAPVIDNVEN 1020 LFTVPISMME NPEISQNSIA KSSSPSVGFQ CFSGLNGLNN TTIVSVPVIF QYNQLYYNTP 1080 TSNSSVLYNE EKNGGETSLD SDGGRSKKLE LQDEMAIPEL KSSEDKQLIV TGSEANFHDS 1140 GNLSSEHLLL SSDEEAQHMQ EKTQTTEEQN AEGSPRFSLL AENHSYVPQL LTVESEMHIE 1200 ASMAEELRSS NCSVHCEEEL CSVIENEDEM QKIEASTGNN NCSPDVFVAR DERRASTLNI 1260 KSYVRRKNKR KWDAERQGAE EHMETENTQK KLEIQDKEAA QQTCNGFIRS PCEGLRPRNG 1320 KLQSYVTEVK VADRRRGSNS MGRRKRAAAE TSDTFECDIE GCRMRFRTKA EIQLHKRNRC 1380 TYDECRKRFS NHKYAMRHQR VHNDERPFKC SWKGCKMSFK WEWARTEHLR LHTGERPYKC 1440 KVAGCGMSFR FVSDFSRHRR KTGHFVSTNR P

Sequence ? help Back to Top

Protein Sequence Length: 1471 aa Download sequence

MTEADIPVWL KNLPLAPEYR PTETEFADPI AFISRIEREA ASFGICKVIP PVPKPSKKFV  60
LSNLNRSLSK SPELGDAAAA SAGPSSEAAV FTTRQQELGS RRGRPALPKQ VWQSGDVYTL  120
EQFEGKSKAF ARSQLGGFKE VTPLLVESLF WKAVTDKPIN IEYANDVPGS GFAVPEEPFR  180
YISWRRNRKR GLHRGKVNEE KCGFRLMSSG DNGQPQKSLG SGSDVEGMKG TSGWKLSNSR  240
WNLQVIARSP GSLTRFMPDD VPGVTSPMVY IGMLFSWFAW HVEDHELHSM NYLHMGSPKT  300
WYAVPQDHAV TLEEMVRFHG YGESVDRLAA FIMLGEKTTL LSPEVLVASG VPCCRLVQHP  360
GEFVVTFPRA YHVGFSHGFN CGEAANFATP EWLKVAKEAA IRRAAMNHLP MLSHQQLLYI  420
LTMSFVSRIP RTLISGVRSS RLRDRKKEER EILVKKAFLT DMMNENYLLC VLLEKESTSP  480
ILWEPYMLPA PCVVSQSYPS ISLKSQYFGD QNGCCTHNQQ MEINTQGESL DKVDDCHVEK  540
PIDEAIALRN TCSVIPLTEQ SYKNPIHADL ATSDLEAFED EDDLPVGLNV DSGSLACVAC  600
GNLGYPFMAV IQPSVEAAKM IFSIICEESH EKSDKSQCFI SSPCLQNDAC NSTAEERCPE  660
VAEQANLHAS CQLCPKSSIT SQHSREHDML KPIGSGSFLN YFPMNSLENK GEKLDATECQ  720
TKSNKCVSDS SANAFCSHGI RSCESVKKME GIWRLKTSKT VENGPGSDSW PFSEDESVKE  780
KVSVPKWDVS NILLRPRVFC LQHAIEVEEL LHNRGGVHIR VICHSDYLKF KAYAASIAEE  840
MRTELQLKDV PLENASQEDL NLINISIDDE EHQEDGKDWT SKLGVNLRYY VKFRKHSAST  900
QEQLPSALSG MFSSSSTVSI LSSLRWLRRK SRTPAKPQCI IAEKPHISAT ATGGVQTLKV  960
IDGDNIKAIQ VYQSRKKKTS DLAFKDHKHP VKELGSCNQN VAVIGKSEYV AAPVIDNVEN  1020
LFTVPISMME NPEISQNSIA KSSSPSVGFQ CFSGLNGLNN TTIVSVPVIF QYNQLYYNTP  1080
TSNSSVLYNE EKNGGETSLD SDGGRSKKLE LQDEMAIPEL KSSEDKQLIV TGSEANFHDS  1140
GNLSSEHLLL SSDEEAQHMQ EKTQTTEEQN AEGSPRFSLL AENHSYVPQL LTVESEMHIE  1200
ASMAEELRSS NCSVHCEEEL CSVIENEDEM QKIEASTGNN NCSPDVFVAR DERRASTLNI  1260
KSYVRRKNKR KWDAERQGAE EHMETENTQK KLEIQDKEAA QQTCNGFIRS PCEGLRPRNG  1320
KLQSYVTEVK VADRRRGSNS MGRRKRAAAE TSDTFECDIE GCRMRFRTKA EIQLHKRNRC  1380
TYDECRKRFS NHKYAMRHQR VHNDERPFKC SWKGCKMSFK WEWARTEHLR LHTGERPYKC  1440
KVAGCGMSFR FVSDFSRHRR KTGHFVSTNR P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1265	1271	RRKNKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein