PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020680999.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 501aa MW: 54915.3 Da PI: 6.2816 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.2 | 3.8e-87 | 104 | 486 | 2 | 374 |
GRAS 2 velLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevs 88 +lL+++Aea+s + + la+ +L rl+el ++g+ ++Rl+ +fte+L+a l + + ++ ++++ + + +e+l+a++l++++s XP_020680999.2 104 LHLLTAAAEALSGdlNGQDLARVILIRLRELlsTDNAGSGIERLTNHFTEGLNALLDG--DATFPRRsESNQFPY-RhypAAEVLTAFQLLQDMS 195 69999****9998445566************53334569******************9..322222212222222.2466*************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 Pi f+hltaNqaI eav+ge rvHi+D+di +G+QW++L+q++asR+ +pp+l+iT+v + + s+ + +etg+rL++fA+++g pf+f++ XP_020680999.2 196 PIASFGHLTANQAIIEAVAGECRVHIVDYDIAEGIQWASLIQEMASRNdgLPPPHLKITAVTNGKRRSASAAKETGRRLSDFAASVGQPFSFRLC 290 ************************************************555699*********9999***************************9 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsle 272 ++ + ++l + ++ +gE ++Vn+vl+ ++ ++s++s ++L +l++++v+++e++ a +++sFl+rf+ le y+a+ +sle XP_020680999.2 291 RLDQHKRFHLAAVKLVKGEPVVVNCVLNPGQVGYGHGSVTS-VGSFLVGAVGLRARLVTLIEEDigaaAGEEKGSFLRRFMIELERYMAIWESLE 384 9999999**************************99999999.99********************6543334667********************* PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366 a++p++ + r +vEr++lg++i +v + + r+ +e+ e++ +aGF v ls ++ +qa+lll ++ dgy+ve++ s+ l+l Wk+r+ XP_020680999.2 385 AGFPKQGRVREMVERVILGPRIIGAVRRAYGWNGIREPIVEECGEWMAAAGFARVGLSFSNLCQARLLLGLFN-DGYKVEDDaSNKLLLSWKSRR 478 *******************************999999999999999***************************.******76599999******* PP GRAS 367 LvsvSaWr 374 L+s+S+W+ XP_020680999.2 479 LLSASVWT 486 *******6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence |
MELVLDDLPA LIFSAGSSTT TTTTTTTTVN DDISWEDWLS PHLNWSHEDF HPFLAAVGDH 60 YFATLPHNIQ NQSSSTSSTT TTPEEDPTPP TKFPIESNKT QRLLHLLTAA AEALSGDLNG 120 QDLARVILIR LRELLSTDNA GSGIERLTNH FTEGLNALLD GDATFPRRSE SNQFPYRHYP 180 AAEVLTAFQL LQDMSPIASF GHLTANQAII EAVAGECRVH IVDYDIAEGI QWASLIQEMA 240 SRNDGLPPPH LKITAVTNGK RRSASAAKET GRRLSDFAAS VGQPFSFRLC RLDQHKRFHL 300 AAVKLVKGEP VVVNCVLNPG QVGYGHGSVT SVGSFLVGAV GLRARLVTLI EEDIGAAAGE 360 EKGSFLRRFM IELERYMAIW ESLEAGFPKQ GRVREMVERV ILGPRIIGAV RRAYGWNGIR 420 EPIVEECGEW MAAAGFARVG LSFSNLCQAR LLLGLFNDGY KVEDDASNKL LLSWKSRRLL 480 SASVWTIPTR MSPSPSPSLA I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 8e-85 | GRAS family protein |