PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020680393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 25842.5 Da PI: 9.6334 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 8e-18 | 85 | 139 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_020680393.1 85 RKKLRLTKEQSALLEDRFNEHSTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 139 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.5e-40 | 85 | 173 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ e +eLr + XP_020680393.1 85 RKKLRLTKEQSALLEDRFNEHSTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRCCESLTEENRRLHGELQELR-S 173 69*************************************************************************************9.4 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MGVVDDPSET GLLLLRLGRT GQTAFTANHH RLVRRDSSAK SKPSVLSSSG PSLTLGFSNG 60 AVKKESDGDG SDEEEDGGGG GDGSRKKLRL TKEQSALLED RFNEHSTLNP KQKLALAKQL 120 SLRPRQVEVW FQNRRARTKL KQTEVDCEFL RRCCESLTEE NRRLHGELQE LRSLKLAAAT 180 QLSMQVPPAT LMLCPSCERV AVVGEADDVV MERAFSPAMK AMMKKKSTLL LKYS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 90 | SRKKLRL |
2 | 134 | 142 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-52 | HD-ZIP family protein |