PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680043.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 302aa MW: 33585.3 Da PI: 6.1706

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	230	264	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_020680043.1 230 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 264 569*****************************885 PP
2	ELK	39.7	1e-13	184	205	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_020680043.1 184 ELKGQLLRKYSGYLGSLKQEFL 205 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MENWSGGNNP LMIMPLLSST AAGANNPLLL HPQPPPPPPA DAYDTTLIKA KIISHPQYPR 60 LLSAYVNLHK VGAPPEVVAR LEEACASSLI SGGGGGGGGG EDPALDQFME AYCEMLTKYE 120 QELSKPFKEA MLFLSRIDSQ FKSLSLSLPP APSQVCADLE KNGSSEDDID LCDNYVDPEA 180 GDRELKGQLL RKYSGYLGSL KQEFLKKRKK GKLPKEARQQ LLDWWTRHYK WPYPSESQKL 240 ALAESTGLDQ KQINNWFINQ RKRHWKPSEE MQFVVMDAAH PHYFMDGGLA GNPFAIDCTP 300 LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	209	LKQEFLKKRK
2	206	210	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-111	TALE family protein