PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679876.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 153aa    MW: 16650 Da    PI: 5.3794
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.68.9e-16321131999
           NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivprd 99 
                      ++P  r+k+i+k+ded+k++s+ea  l+s + elfi  ++ ++ + a  ++r+t+k  d+ +a+t ++ + dfl+d  p+ 
  XP_020679876.1  32 PSFPTGRVKRIIKMDEDIKKVSSEALFLISLSTELFIEFMAEKAGNAAARKRRKTVKLEDLRTAITgHSPTADFLLDCLPET 113
                     579***********************************************************999846889******99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MEAIAELAPV NQPSSDAEET GEPGSDAGVL TPSFPTGRVK RIIKMDEDIK KVSSEALFLI  60
SLSTELFIEF MAEKAGNAAA RKRRKTVKLE DLRTAITGHS PTADFLLDCL PETSKPPPIL  120
AGKKNESEKP LPPGARRIDE FFSKSAEIVQ QSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-31NF-YC family protein