PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679864.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 662aa MW: 74540.4 Da PI: 5.5448

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.6	2.6e-14	452	497	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR+++N++f Lr l+P +K++Ka+iL ++eY+++L XP_020679864.1 452 NHVLAERRRREKLNKRFMILRALVPCV-----TKMDKASILADTIEYVRHL 497 7999********************8.....8***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MKPVSMEELP LKRPKLQQML QSVVQNFGWT YSLFWKLCPQ QGLLVWGDGH YNGSIKTRKT 60 VQTTAVSQDQ MSQSERSEQL KELYQFLAAD GDGGERRRPG LALSPEDLTE CEWFYLMCIS 120 FSFAPGCGLP GKAFETQNSI WLTRANDTNS KVFSRTILAK SAGIQTVVCI PLTNGVLELG 180 TEEMVEEDAT LTQQARNIFA DIHINSPAPA RSEQSTSSPA LECENLPMAY GMDDLCQLCE 240 EVDNKKEDSN NDKNPDCEIT KAYSESELEI GRMIVTNMSM TDQSESIKFG FADNGIIDSE 300 RSQLKNPEVA HKYSSVHSLE QDDKESYLAW YLLQDGSCND LQHSPDSMPV TELPPQDVHY 360 SQTVATILHD NISDFSEGSF ISQLSLSDTS SFSKWFCENQ IFSKTGASQW KLKYILFILP 420 TIHNKKYLNS VHLKGKESGG WKGILQDETN GNHVLAERRR REKLNKRFMI LRALVPCVTK 480 MDKASILADT IEYVRHLTLR IHELELQNQK ISNLLGSKVS DSHNQITSQS ERLETNCSTL 540 SASITQGKQE LAHLPEAKKR RTIQITNNIE EATKAMDDTT ISIQASIIES IAVLELQCPY 600 KNGILLKIMQ KLDELNLEIT SINSAMVNGN FIAEFKAKIK GPYGRRANVE EIKRTIHELL 660 SH

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MKPVSMEELP LKRPKLQQML QSVVQNFGWT YSLFWKLCPQ QGLLVWGDGH YNGSIKTRKT  60
VQTTAVSQDQ MSQSERSEQL KELYQFLAAD GDGGERRRPG LALSPEDLTE CEWFYLMCIS  120
FSFAPGCGLP GKAFETQNSI WLTRANDTNS KVFSRTILAK SAGIQTVVCI PLTNGVLELG  180
TEEMVEEDAT LTQQARNIFA DIHINSPAPA RSEQSTSSPA LECENLPMAY GMDDLCQLCE  240
EVDNKKEDSN NDKNPDCEIT KAYSESELEI GRMIVTNMSM TDQSESIKFG FADNGIIDSE  300
RSQLKNPEVA HKYSSVHSLE QDDKESYLAW YLLQDGSCND LQHSPDSMPV TELPPQDVHY  360
SQTVATILHD NISDFSEGSF ISQLSLSDTS SFSKWFCENQ IFSKTGASQW KLKYILFILP  420
TIHNKKYLNS VHLKGKESGG WKGILQDETN GNHVLAERRR REKLNKRFMI LRALVPCVTK  480
MDKASILADT IEYVRHLTLR IHELELQNQK ISNLLGSKVS DSHNQITSQS ERLETNCSTL  540
SASITQGKQE LAHLPEAKKR RTIQITNNIE EATKAMDDTT ISIQASIIES IAVLELQCPY  600
KNGILLKIMQ KLDELNLEIT SINSAMVNGN FIAEFKAKIK GPYGRRANVE EIKRTIHELL  660
SH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	457	462	ERRRRE
2	458	463	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-71	bHLH family protein