PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679799.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Whirly
Protein Properties Length: 265aa    MW: 29579.7 Da    PI: 9.8627
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1981.3e-61882261139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+++++ p+f  ldsg++k++++G++ll++a+a+++r+ydW++kq+f+ls+ e+++l+ l++k++ceffhdp++++s+eGk+rk lk
  XP_020679799.1  88 SIYKGKAALSLEPKSPEFAPLDSGAFKVSKEGFVLLQFAPAVGTRQYDWNRKQVFSLSVGEIGTLMGLGAKDACEFFHDPFKGKSEEGKIRKLLK 182
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdG+G+f+nl+v+n l++++es+++P+++ae  v++s+++
  XP_020679799.1 183 VEPLPDGTGHFFNLNVQNRLLNADESIYIPIARAELIVMNSAFS 226
                     ****************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MPLFASQTVL HSSHQPPSLL YPSNPLRSYS SIPQTLNLTL KKKTKLHVSS RRSDYFEQQR  60
VAPRAPEERS FTAQSPGTQP TRVYAGYSIY KGKAALSLEP KSPEFAPLDS GAFKVSKEGF  120
VLLQFAPAVG TRQYDWNRKQ VFSLSVGEIG TLMGLGAKDA CEFFHDPFKG KSEEGKIRKL  180
LKVEPLPDGT GHFFNLNVQN RLLNADESIY IPIARAELIV MNSAFSFILP YLLGWHAFAD  240
TIKPDDSIRS NLTSSRSGPE LEWGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-104Whirly family protein