PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679759.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 581aa MW: 64501.8 Da PI: 8.801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.8e-18	58	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ede l++av+++ ++Wk+Ia+ ++ gRt+ qc +rwqk+l XP_020679759.1 58 KGGWTPNEDETLKHAVELHKARNWKKIAESVP-GRTEVQCLHRWQKVL 104 688***************************.**********986 PP
2	Myb_DNA-binding	59	1e-18	110	156	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +++++v+++G+ W+ Ia ++ gR +kqc++rw+++l XP_020679759.1 110 KGPWTPEEDNIIIELVAKYGPTKWSVIAGSLP-GRIGKQCRERWHNHL 156 79****************************.***********97 PP
3	Myb_DNA-binding	55.5	1.3e-17	162	205	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l +a+ q+G++ W+ Ia++++ gR+++++k++w++ XP_020679759.1 162 KDAWTSEEEMELMKAHLQYGNK-WAEIAKMLP-GRSDNSIKNHWNS 205 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MNSLKTEESC VENKQSITAS CSSISEGSSG FSTLSPACSP ANSSPNHRRT SGPIRRAKGG 60 WTPNEDETLK HAVELHKARN WKKIAESVPG RTEVQCLHRW QKVLNPELIK GPWTPEEDNI 120 IIELVAKYGP TKWSVIAGSL PGRIGKQCRE RWHNHLNPEI RKDAWTSEEE MELMKAHLQY 180 GNKWAEIAKM LPGRSDNSIK NHWNSSLRKR SEVYVKTGKF PPVQKPVFRA VAKTETNFRN 240 VAQPMTNFRN VAQPMTNFRN VTKAISNTGD RQLFLCYDKE FNISSKTVLE NCLTIPCSLP 300 LETPKAESQK DGVSTLSSQV LELNATLDVA ARLSDNSDAR DCQARASEIN HVQNISESAA 360 SLDSCRLNGE VHRNEEPLET VHYSVPDNIG SLCYKPPQLE DLGAATFTSL FFGDRSMQPT 420 SDHVIISSPI SPSTPSPTNI LKACQPSVES ILKSAARSFP NTPSIIKRRR EVHIPIPPET 480 MHTNETGIHE SCTPKEGSSS KLSKLFSSPL NISGGSLDYG KNLNFSPVYQ LRSKRKAAFK 540 SLEKQLDFTM EEANLESNTK ISSLAVNKSS SSPTNMQFLS I

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MNSLKTEESC VENKQSITAS CSSISEGSSG FSTLSPACSP ANSSPNHRRT SGPIRRAKGG  60
WTPNEDETLK HAVELHKARN WKKIAESVPG RTEVQCLHRW QKVLNPELIK GPWTPEEDNI  120
IIELVAKYGP TKWSVIAGSL PGRIGKQCRE RWHNHLNPEI RKDAWTSEEE MELMKAHLQY  180
GNKWAEIAKM LPGRSDNSIK NHWNSSLRKR SEVYVKTGKF PPVQKPVFRA VAKTETNFRN  240
VAQPMTNFRN VAQPMTNFRN VTKAISNTGD RQLFLCYDKE FNISSKTVLE NCLTIPCSLP  300
LETPKAESQK DGVSTLSSQV LELNATLDVA ARLSDNSDAR DCQARASEIN HVQNISESAA  360
SLDSCRLNGE VHRNEEPLET VHYSVPDNIG SLCYKPPQLE DLGAATFTSL FFGDRSMQPT  420
SDHVIISSPI SPSTPSPTNI LKACQPSVES ILKSAARSFP NTPSIIKRRR EVHIPIPPET  480
MHTNETGIHE SCTPKEGSSS KLSKLFSSPL NISGGSLDYG KNLNFSPVYQ LRSKRKAAFK  540
SLEKQLDFTM EEANLESNTK ISSLAVNKSS SSPTNMQFLS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	2e-99	MYB family protein