PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679748.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 662aa    MW: 75904.8 Da    PI: 5.5842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.21.8e-1112906583374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cA+ v+ gd+ +a a+L+++++++s +gd++qR+a+yf+ +L+arl++++se+y++l  ++ +    +++l+a++++   +P+ k+s+  
  XP_020679748.1 290 TLLLQCAQTVAIGDNPRAYAMLKQIRQHSSLHGDAFQRVAHYFADGLEARLSGTGSEVYRSLVFKRRT---IKDVLNAYQFYLASCPFKKVSYHF 381
                     79**************************************************************9999...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aNq+Il+ +++++rvHi+Df+i  G+QWp Ll+ L+ Rp++pp+lRiTg++ p++g   +e++ etg+rLa++Ae++gvpfe++  +a +++d++
  XP_020679748.1 382 ANQTILDTIQNATRVHIVDFGIYFGFQWPVLLKLLSLRPGEPPKLRITGIDIPQPGfrPTEMIDETGRRLADYAEQFGVPFEYHG-IAAKFDDIN 475
                     *******************************************************9*9***************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +eeL +k++E+l+Vn+ ++lh+  de+v  + +rd+vL+++++++P v+v v  +  ++++ ++ r+ eal++ysalfd+l+++ prese r +v
  XP_020679748.1 476 VEELCIKEEETLVVNCLFRLHSPADETVVENCPRDKVLNTIRKMNPAVFVNVVLNGTYGAPFYMFRVREALYHYSALFDMLDSTTPRESERRLMV 570
                     ************************99999999*************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er l g+ + n+++ceg e rer et+++W+ r  +aGF+ vp s++ +k++k  +r ++ + ++++e+  +l+ gWk+r L  +SaW+
  XP_020679748.1 571 ERNLYGPLLINAISCEGME-RERPETYKQWQVRCLRAGFEMVPNSKDFVKKVKDCVRSIYHKDFTMDEDGRWLLTGWKGRLLCGLSAWK 658
                     *******************.9***************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    
MSKDSITAES LKFSDFLRQP LNDQISFFDS PVSNPRSNEG ESQERSEIFS DELLHSINQM  60
LMEEDADDKY VMLQSHPDLE ATEKPFYELI AKKYPPSPDR PSLYSSPSPE SSGDNQGNNK  120
VIRGIDFFQA NSEIAEYQNW DIYPFHQSQE DQFTDHFFKN LPASEYNRGV EEAKKFLPSE  180
HKLVVGVGEA DLSLPQELIE RAGRKQNRHS DASGYDEATR TKQSAFSSED SMVSLEALDE  240
ALLCYGDKFP KVVKTLRENI YKEASKYPKN TKPKEVGNKK TSEEEADINT LLLQCAQTVA  300
IGDNPRAYAM LKQIRQHSSL HGDAFQRVAH YFADGLEARL SGTGSEVYRS LVFKRRTIKD  360
VLNAYQFYLA SCPFKKVSYH FANQTILDTI QNATRVHIVD FGIYFGFQWP VLLKLLSLRP  420
GEPPKLRITG IDIPQPGFRP TEMIDETGRR LADYAEQFGV PFEYHGIAAK FDDINVEELC  480
IKEEETLVVN CLFRLHSPAD ETVVENCPRD KVLNTIRKMN PAVFVNVVLN GTYGAPFYMF  540
RVREALYHYS ALFDMLDSTT PRESERRLMV ERNLYGPLLI NAISCEGMER ERPETYKQWQ  600
VRCLRAGFEM VPNSKDFVKK VKDCVRSIYH KDFTMDEDGR WLLTGWKGRL LCGLSAWKPL  660
CF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein