PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679735.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 669aa    MW: 76869.6 Da    PI: 5.9455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.35.8e-1172976653374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cA+ v++gd+ +a +lL+++++++sp+gd+ qRla+yf+++L+arla+++se++++l +++ +   +s+ l+a++l+  ++P+ k+++  
  XP_020679735.1 297 TLLLHCAQSVANGDNPRAYELLKQIRQHSSPHGDASQRLAHYFANGLEARLAGTGSEVFHSLVSKRRT---VSDGLKAYQLYLACCPFKKITYYF 388
                     79************************************************************999998...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aNq Il  ++++++vHi+Df+i  G+QWpa++++L++Rp+gpp+lRiTg++ pe+g   ++++e tg+rLa+fAe++gvpfe+n+ va ++++++
  XP_020679735.1 389 ANQIILGTIQNATTVHILDFGIYFGFQWPAFIHELSQRPGGPPKLRITGIDIPEPGfhPTDRIELTGHRLAEFAERFGVPFEYNA-VAAKFDEVK 482
                     ******************************************************9999***************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+Lr+++gE+l+Vn+ ++lh+  de+ + + +rd+vL+ v++l+P ++v v  +  ++++ F+ rf eal+y+sa+fd l++++pre+e+r+ v
  XP_020679735.1 483 IEDLRIEEGEMLVVNCLFRLHNPADETETENCPRDKVLNNVRKLKPALFVNVVVNGTYGAPFFMSRFREALYYFSAIFDVLDSTAPRENEQRMLV 577
                     ************************99999999*************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er ++g+++ nv++ceg e rer et+++W+ r+ +aGF++++++++  kq k  lr+++ + ++++e+ ++++ gWk+r L+ +SaW+
  XP_020679735.1 578 ERDVFGKHLINVISCEGLE-RERPETYKQWKVRFLRAGFEQLAIRKELIKQGKDWLRTFYHKDFHMDEDGKWVLEGWKGRILYGLSAWK 665
                     *******************.9***************************************889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    
MSKDSTAAED FNYSDFPFYE QNNFDESPVF SSQSHERISH EPSDLFANMV LEYISQVLLE  60
EDADDKSDML QSHPNLEATE KPFYELIGEK YPSSPDQFPL YSSPSPESLD SNRSHSSNSS  120
GIQSFHDNSE FPEYQNYQIP LSQSSLSSVN GGGNDLLFKT LPTIQFEKGI EEAKKFLPSV  180
DKLTLNVGQL DLTLLQNPIK QERRQKNRHF DDSGFEETRR IKQLALSYEE PVIPSEMFDD  240
VLLCSCERFP QVVSAIREKM YREAGKDFKN SNPNESGVGR KSRRKKQLKE EVVDFNTLLL  300
HCAQSVANGD NPRAYELLKQ IRQHSSPHGD ASQRLAHYFA NGLEARLAGT GSEVFHSLVS  360
KRRTVSDGLK AYQLYLACCP FKKITYYFAN QIILGTIQNA TTVHILDFGI YFGFQWPAFI  420
HELSQRPGGP PKLRITGIDI PEPGFHPTDR IELTGHRLAE FAERFGVPFE YNAVAAKFDE  480
VKIEDLRIEE GEMLVVNCLF RLHNPADETE TENCPRDKVL NNVRKLKPAL FVNVVVNGTY  540
GAPFFMSRFR EALYYFSAIF DVLDSTAPRE NEQRMLVERD VFGKHLINVI SCEGLERERP  600
ETYKQWKVRF LRAGFEQLAI RKELIKQGKD WLRTFYHKDF HMDEDGKWVL EGWKGRILYG  660
LSAWKPRCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-172GRAS family protein