PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679723.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 579aa    MW: 66008.5 Da    PI: 6.6418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.75e-1111965692374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+a+s++dl  a++lL++++++++p gd++qRla++f+++L+ar+++ + + + +    + ++ ++s+ l+a++++  + P+ k+s +
  XP_020679723.1 196 DSLLIQCAQAISENDLPHAHKLLNQIRQHSTPFGDSNQRLAHCFANGLEARITGGGGGGSVSYYFPSPPPATVSDMLKAHQIYLAAAPFKKISDF 290
                     689***************************************************665555555555555678*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      a q Il+   +++r+HiiDf+i +G+ Wp++lq L++ ++g+p+lRiTg++ p++g    e+leetg+rL+++A+++++pf++++ +a ++e+l
  XP_020679723.1 291 FAHQNILNISGKSRRLHIIDFGIYHGFMWPCFLQRLSTLTGGAPMLRITGIDFPQPGfrPXERLEETGRRLSEYARRFDIPFQYHP-IACKWETL 384
                     ********************************************************9*****************************.6999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e++ ++++E+l+Vn++ +l++l desvs +++rd+vL+++++l+P+v+v+   +  +n++ Fl+rf ea+ ++sal+d+le++++re+e+r+ 
  XP_020679723.1 385 QPEDFGIEEDEVLVVNCMNRLQNLADESVSPKNPRDQVLNTIRKLKPDVFVLGIVNGTYNTPFFLRRFKEAMFHFSALLDMLETNVGREDEHRRL 479
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er++++re+ nv++ceg er+er et+++W+ r e+aG+ +v+l+ +++ + +l l++++ + ++v e+ ++l++gWk+r L+ +SaWr
  XP_020679723.1 480 LERHFFEREAFNVISCEGLERVERPETYKQWKTRSERAGLVQVSLDADIVRKSRLKLKRCYHKDFMVVEDGEWLLQGWKGRILYGLSAWR 569
                     *************************************************************889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    
MQTNLHLQAF SKEIPTSDAS SNPRQSSGQD LHEDSEIFSE IVLTYMNQIL MEEDSDEKLD  60
MLQEHPALLA TEKPFYDIIA DTQLSSSSAS NRPTFPSNHH NSYNDSLSPQ GEPPVKSTNS  120
RKTLQGDDNL EAEEGRSLKQ SALCFDTEVP LEMLDALLFK ECKGNRQVET CYETSHGRTK  180
SGTKKKLEKK ESVVLDSLLI QCAQAISEND LPHAHKLLNQ IRQHSTPFGD SNQRLAHCFA  240
NGLEARITGG GGGGSVSYYF PSPPPATVSD MLKAHQIYLA AAPFKKISDF FAHQNILNIS  300
GKSRRLHIID FGIYHGFMWP CFLQRLSTLT GGAPMLRITG IDFPQPGFRP XERLEETGRR  360
LSEYARRFDI PFQYHPIACK WETLQPEDFG IEEDEVLVVN CMNRLQNLAD ESVSPKNPRD  420
QVLNTIRKLK PDVFVLGIVN GTYNTPFFLR RFKEAMFHFS ALLDMLETNV GREDEHRRLL  480
ERHFFEREAF NVISCEGLER VERPETYKQW KTRSERAGLV QVSLDADIVR KSRLKLKRCY  540
HKDFMVVEDG EWLLQGWKGR ILYGLSAWRT GDRAIKVLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-141GRAS family protein