PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679482.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 425aa    MW: 46355.7 Da    PI: 5.7218
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.19.3e-91394182373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lL++cA+a++++d++laq+lL+ l+++a pdgd++qRl++ f++AL  r +rs+s++++  +p + +      +l+a +l  f +++P+++f+
  XP_020679482.1  39 EQLLVHCAHAIEANDATLAQQLLWVLHNIAPPDGDSNQRLTSAFLRALLLRASRSGSSISAPATPHHPQ---FPLRLSAISLagFIDLTPWHRFG 130
                     79****************************************************999999777666665...666667776677*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl... 181
                     + +aN+aI +a++g   +H +D+  ++++Q p+L++aLasRpegpp lR+T  + p+s+        +l e+g+rL +fA++ +v ++f+v+   
  XP_020679482.1 131 FSAANSAIADAADGFPVLHLVDLTTTHCMQIPTLIDALASRPEGPPFLRLTLPSTPASTsppptLDISLDELGSRLVNFARSRNVGMDFRVVpst 225
                     ****************************************************9999999888877889***********************8554 PP

            GRAS 182 vakrledleleeL..rvkp.gEalaVnlvlqlhrlldesv.sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                      a+ +++l le L  ++++ gEal++n++++ hr++des+  + s+r+ + k ++sl P +vv+v++ead +s++ ++r+  a++y++  fd++e
  XP_020679482.1 226 PADGFHSL-LEYLgaNCNNaGEALVINCHMMPHRIPDESAgGILSPRTVFAKSLRSLDPSLVVLVDEEADFTSSDVVTRLRAAFNYMWIPFDAVE 319
                     34455555.66663355559*****************986257779************************************************* PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     + lp+ se+r+k+E++ + ++i+nv+a+eg +r+er e +++W +r+++aGF  + ++e+aa+++k++l +++  g+ ++ +++ lvl+Wk++ +
  XP_020679482.1 320 TFLPAGSEQRRKYEAA-VCWKIENVIAQEGVQRVERLEPKGRWGQRMRAAGFVGIGFGEEAAMEVKSMLDEHS-AGWGMKRDDDDLVLTWKGHDV 412
                     ****************.99*****************************************************9.8999***************** PP

            GRAS 368 vsvSaW 373
                      +++aW
  XP_020679482.1 413 AFATAW 418
                     ****** PP

Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MMQFTENPPP PPLYPTRPWP DFPNSAKSLG SFNNAACMEQ LLVHCAHAIE ANDATLAQQL  60
LWVLHNIAPP DGDSNQRLTS AFLRALLLRA SRSGSSISAP ATPHHPQFPL RLSAISLAGF  120
IDLTPWHRFG FSAANSAIAD AADGFPVLHL VDLTTTHCMQ IPTLIDALAS RPEGPPFLRL  180
TLPSTPASTS PPPTLDISLD ELGSRLVNFA RSRNVGMDFR VVPSTPADGF HSLLEYLGAN  240
CNNAGEALVI NCHMMPHRIP DESAGGILSP RTVFAKSLRS LDPSLVVLVD EEADFTSSDV  300
VTRLRAAFNY MWIPFDAVET FLPAGSEQRR KYEAAVCWKI ENVIAQEGVQ RVERLEPKGR  360
WGQRMRAAGF VGIGFGEEAA MEVKSMLDEH SAGWGMKRDD DDLVLTWKGH DVAFATAWVP  420
SSATS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-135GRAS family protein