PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020679482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 425aa MW: 46355.7 Da PI: 5.7218 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 296.1 | 9.3e-91 | 39 | 418 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 ++lL++cA+a++++d++laq+lL+ l+++a pdgd++qRl++ f++AL r +rs+s++++ +p + + +l+a +l f +++P+++f+ XP_020679482.1 39 EQLLVHCAHAIEANDATLAQQLLWVLHNIAPPDGDSNQRLTSAFLRALLLRASRSGSSISAPATPHHPQ---FPLRLSAISLagFIDLTPWHRFG 130 79****************************************************999999777666665...666667776677*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl... 181 + +aN+aI +a++g +H +D+ ++++Q p+L++aLasRpegpp lR+T + p+s+ +l e+g+rL +fA++ +v ++f+v+ XP_020679482.1 131 FSAANSAIADAADGFPVLHLVDLTTTHCMQIPTLIDALASRPEGPPFLRLTLPSTPASTsppptLDISLDELGSRLVNFARSRNVGMDFRVVpst 225 ****************************************************9999999888877889***********************8554 PP GRAS 182 vakrledleleeL..rvkp.gEalaVnlvlqlhrlldesv.sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 a+ +++l le L ++++ gEal++n++++ hr++des+ + s+r+ + k ++sl P +vv+v++ead +s++ ++r+ a++y++ fd++e XP_020679482.1 226 PADGFHSL-LEYLgaNCNNaGEALVINCHMMPHRIPDESAgGILSPRTVFAKSLRSLDPSLVVLVDEEADFTSSDVVTRLRAAFNYMWIPFDAVE 319 34455555.66663355559*****************986257779************************************************* PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 + lp+ se+r+k+E++ + ++i+nv+a+eg +r+er e +++W +r+++aGF + ++e+aa+++k++l +++ g+ ++ +++ lvl+Wk++ + XP_020679482.1 320 TFLPAGSEQRRKYEAA-VCWKIENVIAQEGVQRVERLEPKGRWGQRMRAAGFVGIGFGEEAAMEVKSMLDEHS-AGWGMKRDDDDLVLTWKGHDV 412 ****************.99*****************************************************9.8999***************** PP GRAS 368 vsvSaW 373 +++aW XP_020679482.1 413 AFATAW 418 ****** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence |
MMQFTENPPP PPLYPTRPWP DFPNSAKSLG SFNNAACMEQ LLVHCAHAIE ANDATLAQQL 60 LWVLHNIAPP DGDSNQRLTS AFLRALLLRA SRSGSSISAP ATPHHPQFPL RLSAISLAGF 120 IDLTPWHRFG FSAANSAIAD AADGFPVLHL VDLTTTHCMQ IPTLIDALAS RPEGPPFLRL 180 TLPSTPASTS PPPTLDISLD ELGSRLVNFA RSRNVGMDFR VVPSTPADGF HSLLEYLGAN 240 CNNAGEALVI NCHMMPHRIP DESAGGILSP RTVFAKSLRS LDPSLVVLVD EEADFTSSDV 300 VTRLRAAFNY MWIPFDAVET FLPAGSEQRR KYEAAVCWKI ENVIAQEGVQ RVERLEPKGR 360 WGQRMRAAGF VGIGFGEEAA MEVKSMLDEH SAGWGMKRDD DDLVLTWKGH DVAFATAWVP 420 SSATS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-135 | GRAS family protein |