PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679202.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 808aa    MW: 90766.3 Da    PI: 6.4398
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.8e-22129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d +   W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_020679202.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDIHDVDWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNE 219
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_020679202.1 220 KNQLLLGIRRA 230
                     9999****997 PP
2Auxin_resp117.31.3e-38255338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++Y+Pra++seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_020679202.1 255 AAHAAATNSRFTIFYHPRACPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                     79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    
MKLSTVGVLV QQDEEGGDKR CLNSELWHAC AGPLVCLPNV GTRVVYFPQG HSEQVVASTN  60
KEVEGHIPNY PNLPPQLICQ LHDVTMHADA ETDEVYTQMT LQPLNPQDLK DTYLPAEMGL  120
PSKQPMNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDIHDVDWK  180
FRHIFRGQPK RHLLTTGWSI FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQNAVPSS  240
VISSDSMHIG LLAAAAHAAA TNSRFTIFYH PRACPSEFVI PLSKYVKAVF HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVN WDESTAGDRQ PRASLWEIEP  360
LTTFPMYPSL FPLRLKPPWY TGVSSLNDYK LDEGNAYMWL RGSSGGGIRS LNFQSPGIGP  420
CVQQQVQPQL GNNHTPYQAM DAAACDIRGM DSLRQPFLNF QQPFQFPQQF CMNPLLQQQV  480
IQQAHHEQIM NSQAQSLLDS QPNITSNQLL QQPYGDQQKQ KGQQQPTYPE LFHVQINNIE  540
QQQLPIPSPL SQKSVFPDST MNFSSVATPS CIQNLSAAAY SGTNANNLHF AKTGQTMLAE  600
QHQQKWDPQF ALQKVSTFGN TVLLQPFHGK DDTRESDVSP TDTQNHSLFD INVGSSLLLG  660
NVVPNLLNAN NNDNVVSSMP FTTSYLQNSL YHSLDESSGM LQHTYDIDPS IKTFVKVYKS  720
GSVGRSLDIT RFSNYTELRK ALGQMFGIEG QLENPLRSGW QLVFVDREND VLLLGDDPWE  780
SFVNNVWYIK ILSPEDVQQM GQQGVDLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein