PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678932.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 262aa MW: 29686.4 Da PI: 9.7838

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.1	1.6e-32	180	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ XP_020678932.1 180 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 238 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MLPSTAEISL REGLVESHEV PMDQTSHIRF SFQSSSLPPL TCHPLGIIQN RLFASSTDVV 60 AEASSSSSPH LKETALLSSV PLRASEAAST LLRSTTNPCW SWSEETTRGP RATVDTHKNI 120 GSMSDKSIHE NLSNYTVNPK INRVGNNLSV GAMRMKKVKA RRKVREPRFC FKTMSEVDVL 180 DDGYKWRKYG QKVVKNTQHP RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHAHSPS 240 HDEDDQSQPS SMRSQLSTSF FW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	9e-53	WRKY family protein