PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678878.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 350aa MW: 38650.9 Da PI: 5.0758

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	220	275	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a++qLGG+++AtPk+i+elm v+gLt+++vkSHLQkYRl+ XP_020678878.1 220 KARRCWSPELHRRFVMALQQLGGAQVATPKQIRELMMVDGLTNDEVKSHLQKYRLH 275 68****************************************************97 PP
2	Myb_DNA-binding	39.8	1e-12	222	273	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v a +qlGg t+k I + m g+t ++ks++qky+ XP_020678878.1 222 RRCWSPELHRRFVMALQQLGGAqvaTPKQIRELMMvDGLTNDEVKSHLQKYR 273 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGSLMAELGL DLKLFTKKTI GCFLKNEMKL KDFVGLLEEE RQKIEAFKRE LPLCMILVND 60 VIDELKLEAE QCQGGDGVIE EEFIPLKARS DEEDKEDQKD VKLEKDNMEK MDWMSSVQLW 120 NDNCSDESVN FKKDSHKNGD AVSLESKSRS AGIGAFLPLK VILTRNEEKT LSISLPDLPT 180 AISAPTATTS AVASDNRIIG QSAPSTSAGS AYLVLQAQRK ARRCWSPELH RRFVMALQQL 240 GGAQVATPKQ IRELMMVDGL TNDEVKSHLQ KYRLHTRRMP SSTATEANKA VAMVGSLWAS 300 QDQSQISQQS VTQFGSPQGP LQLACTAQAL SATGGDSCED DGRSESYSWK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGSLMAELGL DLKLFTKKTI GCFLKNEMKL KDFVGLLEEE RQKIEAFKRE LPLCMILVND  60
VIDELKLEAE QCQGGDGVIE EEFIPLKARS DEEDKEDQKD VKLEKDNMEK MDWMSSVQLW  120
NDNCSDESVN FKKDSHKNGD AVSLESKSRS AGIGAFLPLK VILTRNEEKT LSISLPDLPT  180
AISAPTATTS AVASDNRIIG QSAPSTSAGS AYLVLQAQRK ARRCWSPELH RRFVMALQQL  240
GGAQVATPKQ IRELMMVDGL TNDEVKSHLQ KYRLHTRRMP SSTATEANKA VAMVGSLWAS  300
QDQSQISQQS VTQFGSPQGP LQLACTAQAL SATGGDSCED DGRSESYSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-52	G2-like family protein