PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678484.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28745.9 Da PI: 7.2908

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	9.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdae a+iifss+gklyeys+ XP_020678484.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAELALIIFSSRGKLYEYST 59 79***********************************************96 PP
2	K-box	77.8	2.8e-26	84	173	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + l+q++ Lk +++ Lqr+ hl+Ge+L++Ls+keLqqLe+qLe++lk+iRs+ n+ ll +i+ lq+kek+l e++ L+kk+ XP_020678484.1 84 DSEPQDDLCQDYGYLKGKVDALQRSRSHLMGEKLDNLSIKELQQLEHQLETALKHIRSQTNQQLLHSIDVLQRKEKSLLEQKIVLEKKVI 173 45557789*****************************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AELALIIFSS RGKLYEYSTD 60 NCIERIIERY ERYSYAEKAH LMNDSEPQDD LCQDYGYLKG KVDALQRSRS HLMGEKLDNL 120 SIKELQQLEH QLETALKHIR SQTNQQLLHS IDVLQRKEKS LLEQKIVLEK KVIESENSIK 180 MLQQMQASEL SHAEASHSSP PTLEATNSLP TMNIGGHTWP AVLLAKMSHF CSDENCPPAS 240 VEDFCLQINI I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-73	MIKC_MADS family protein