PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678414.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARR-B
Protein Properties Length: 711aa    MW: 78236.9 Da    PI: 5.8275
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.2e-28215268155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_020678414.1 215 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 268
                     79*******************.********************************8 PP
2Myb_DNA-binding383.8e-12217267148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+ +++t++++ s++qky+
   XP_020678414.1 217 RVVWSVELHRKFVAAVNQLGIDkaVPKRILDLMNvEKLTRENVASHLQKYR 267
                      678********************************99*************7 PP
3Response_reg77.26e-26261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l + +y +v+++ ++ +al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++ +   ++ G
  XP_020678414.1  26 VLAVDDDPTCLKVLENLLLRCQY-HVTTTNQAIKALNMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGNKDAVMMGISHG 118
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel++
  XP_020678414.1 119 ACDYLLKPVRIEELRN 134
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MTVEEKWGSM GGDEDQGDQF PIGMRVLAVD DDPTCLKVLE NLLLRCQYHV TTTNQAIKAL  60
NMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGNKDA VMMGISHGAC  120
DYLLKPVRIE ELRNIWQHVV RRRKFDHKER CSFDNGEDHD KPLAANSEGT QTIGDNGPLD  180
HSGKVNRKRK DQNEEDEDYC DENTHESEDP SSQKKPRVVW SVELHRKFVA AVNQLGIDKA  240
VPKRILDLMN VEKLTRENVA SHLQKYRLYL KRLSAVASQQ ANMAAALGGR DTSYLHMGTF  300
NGFGNFHGLS TSGPLQGFTA FQPSGISRRT NPNLLGLPGL APGTVQIGLT QNTTNNHMSD  360
LSKFQHIVAP SNQHENLLQG IPTSLELDQL QQNQKRIQEA NNRLPGVFSG ASNNSFISAA  420
NSSMILQGHQ QQTELRGLIS QSSIAMPSIG ADRLEMSSGV TSHLPDLSRC NETWQSAPSL  480
SGYNANTLSM GSSYGNDNMA SSNMGGNLAS AVPQFNGNPL NITSNNLLTT AQDSLMGRDM  540
QCRTSSLSGN TLLMPSGIDV DPKFLNFKSS ANLKQKLEDP TQLNALESNI TLSSSLTSTL  600
PNQTLLNTVA DSQRLHSRTY SKKVDGNTIS PPCFDTSFMS VYTKMNKSNI DSRLTFNEEN  660
MLGSSKMQGG FASSNCNFDE LMNAMIKPER DDVIFVDGEI GSDLFPLSTC M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120ARR-B family protein