PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020678250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 457aa MW: 50203.1 Da PI: 4.5914 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 268.5 | 2.2e-82 | 91 | 442 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+lL ++Ae +s + ++ l++a+Larl+el a + + m+Rla++ft+AL++ l + +p ++ e l a+ l +++sP++ XP_020678250.2 91 LVHLLKAAAESLSGDLKTpaLTEAILARLRELllARTTSTGMERLATHFTNALHSLLDA----AGDVEEPL----QQPCEFLRAFLLMQDMSPCI 177 5788888888887743335599*********98788888******************99....22222333....346999************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 kf+h+taNqaIle+v+ge+rvHi+Dfdi +G+QW++L+qaL s + ++pp+l+iT+v++ +++++etg rLa+fA+++g+pf+f ++ XP_020678250.2 178 KFGHFTANQAILESVAGERRVHIVDFDIAEGVQWASLMQALVSINngSPPPHLKITAVAR----YRRSVQETGGRLADFAASVGLPFSFGQCRTD 268 ******************************************988667789*********....9**************************8888 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++++ ++v +gEal+ n++lq + + ++++ l ++vv++v++e++ F rf+e + ysa+ d+l+a++ ++ XP_020678250.2 269 YDGQFRPAGIKVVRGEALVFNCILQPGSAG----GS----LSFISGAAALGARVVTIVDEESEG--VGFEGRFMEEMMRYSAIWDALDAGFEKQG 353 8899********************888876....33....459******************986..99*************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +er +vEr++lg++i +v + + +e e+ ++rle+a F+ + ls ++ +qa+lll ++ +gyr+ee + lvl+Wk+ +L+s+S+W XP_020678250.2 354 REREMVERVFLGPRIAAAVERAYKG----MEAWENLEKRLEAAEFGRMGLSFFNICQARLLLCLFS-EGYRLEEGTNKLVLCWKSCRLISASVW 442 ********************99998....899999999****************************.*************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence |
MNEMMERDIF GFSSTNSIPI NADLGWRDWS PGINWDDFTG ADDFHGQIDS MMTAAVDLHD 60 WYTCVSPTST NCPGSPAEDL IPSSDDTAVR LVHLLKAAAE SLSGDLKTPA LTEAILARLR 120 ELLLARTTST GMERLATHFT NALHSLLDAA GDVEEPLQQP CEFLRAFLLM QDMSPCIKFG 180 HFTANQAILE SVAGERRVHI VDFDIAEGVQ WASLMQALVS INNGSPPPHL KITAVARYRR 240 SVQETGGRLA DFAASVGLPF SFGQCRTDYD GQFRPAGIKV VRGEALVFNC ILQPGSAGGS 300 LSFISGAAAL GARVVTIVDE ESEGVGFEGR FMEEMMRYSA IWDALDAGFE KQGREREMVE 360 RVFLGPRIAA AVERAYKGME AWENLEKRLE AAEFGRMGLS FFNICQARLL LCLFSEGYRL 420 EEGTNKLVLC WKSCRLISAS VWSAPPLLSP EESYLSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 7e-88 | GRAS family protein |