PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678250.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 457aa    MW: 50203.1 Da    PI: 4.5914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678250.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.52.2e-82914421373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                     lv+lL ++Ae +s + ++  l++a+Larl+el  a  + + m+Rla++ft+AL++ l        +  +p     ++  e l a+ l +++sP++
  XP_020678250.2  91 LVHLLKAAAESLSGDLKTpaLTEAILARLRELllARTTSTGMERLATHFTNALHSLLDA----AGDVEEPL----QQPCEFLRAFLLMQDMSPCI 177
                     5788888888887743335599*********98788888******************99....22222333....346999************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     kf+h+taNqaIle+v+ge+rvHi+Dfdi +G+QW++L+qaL s +  ++pp+l+iT+v++     +++++etg rLa+fA+++g+pf+f    ++
  XP_020678250.2 178 KFGHFTANQAILESVAGERRVHIVDFDIAEGVQWASLMQALVSINngSPPPHLKITAVAR----YRRSVQETGGRLADFAASVGLPFSFGQCRTD 268
                     ******************************************988667789*********....9**************************8888 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        ++++  ++v +gEal+ n++lq  +       +     ++++    l ++vv++v++e++     F  rf+e +  ysa+ d+l+a++ ++ 
  XP_020678250.2 269 YDGQFRPAGIKVVRGEALVFNCILQPGSAG----GS----LSFISGAAALGARVVTIVDEESEG--VGFEGRFMEEMMRYSAIWDALDAGFEKQG 353
                     8899********************888876....33....459******************986..99*************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +er +vEr++lg++i  +v  + +     +e  e+ ++rle+a F+ + ls ++ +qa+lll  ++ +gyr+ee  + lvl+Wk+ +L+s+S+W
  XP_020678250.2 354 REREMVERVFLGPRIAAAVERAYKG----MEAWENLEKRLEAAEFGRMGLSFFNICQARLLLCLFS-EGYRLEEGTNKLVLCWKSCRLISASVW 442
                     ********************99998....899999999****************************.*************************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MNEMMERDIF GFSSTNSIPI NADLGWRDWS PGINWDDFTG ADDFHGQIDS MMTAAVDLHD  60
WYTCVSPTST NCPGSPAEDL IPSSDDTAVR LVHLLKAAAE SLSGDLKTPA LTEAILARLR  120
ELLLARTTST GMERLATHFT NALHSLLDAA GDVEEPLQQP CEFLRAFLLM QDMSPCIKFG  180
HFTANQAILE SVAGERRVHI VDFDIAEGVQ WASLMQALVS INNGSPPPHL KITAVARYRR  240
SVQETGGRLA DFAASVGLPF SFGQCRTDYD GQFRPAGIKV VRGEALVFNC ILQPGSAGGS  300
LSFISGAAAL GARVVTIVDE ESEGVGFEGR FMEEMMRYSA IWDALDAGFE KQGREREMVE  360
RVFLGPRIAA AVERAYKGME AWENLEKRLE AAEFGRMGLS FFNICQARLL LCLFSEGYRL  420
EEGTNKLVLC WKSCRLISAS VWSAPPLLSP EESYLSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-88GRAS family protein