PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677905.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 710aa    MW: 77795.4 Da    PI: 6.3435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.91.1e-903367091374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalklfs 85 
                     lv++Ll+ Ae v++g+l  a+ +Larl+++  s  g+p+ R a+yf+eAL+  +++  ++ + + pp + ++           ++ +l+a+k+fs
  XP_020677905.1 336 LVDQLLKTAELVEAGNLVGAHGILARLNHQlPSAIGEPFLRSAFYFKEALQLLVNSANPQAATSSPPHHHRTPFtsplaspldVVLKLSAYKAFS 430
                     6899************************99899999********************99998887766665543357888898899999******* PP

            GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     evsPil+f+++ta qa+le++  ++++HiiDfdi+ G+QW +++q+La R+   +   +l+iT+++sp +++  el+ t+e+L++fA+ l++pfe
  XP_020677905.1 431 EVSPILQFTNFTATQALLEEIGAADCIHIIDFDIGVGGQWSSFMQELAHRRsssSALSMLKITAFVSPYAFHPLELHLTKENLSHFAADLNIPFE 525
                     ************************************************99854344559************************************ PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     +n+   ++++  e+  L+  ++Ea+aVnl + + + +          +++L+lvk+l Pk+v+ ++q +d+++  F + + +al+ + +l+ds++
  XP_020677905.1 526 INIASIESFDPAEILVLSAGSNEAIAVNLPVGVWQGP--------SFPTLLRLVKQLLPKIVISMDQGCDRGDLLFSHYLRHALQSCIVLLDSFD 612
                     ***777777777777778888**********999888........3667*********************************************9 PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     a  +++++  +k+Er++l+++i+n+v  ++       e++  Wr  + +aGF p ++s+++++qa++ll++v+++g++ve+++++l+l+W++ +L
  XP_020677905.1 613 AA-GTDQDLTNKIERFVLQPRIENCVIGRHCT----AEKMLPWRTLFASAGFVPFQFSNFTEAQAECLLKRVQVRGFHVEKRQAALYLYWQRGEL 702
                     99.899999*****************999988....9999******************************************************* PP

            GRAS 368 vsvSaWr 374
                      svSaWr
  XP_020677905.1 703 ASVSAWR 709
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
MRGLPFNYQR KGTVLVLESQ ARGTGVEEKT GVFWSSSVQN RKKGVILEPR SVLDQRSPSP  60
PTSTSTLSSP LGGGAARFTD TAGVAAVSGK PTFKWTNTAG EEGGRKEEWA PELHPVPASL  120
EVDWDNMLSE SAASPGQEQT FLHWIMGDID DPAKQQHLML SSPTSMAEID SGSHGVGFGL  180
IDPGFGFEPN ASASAISSHP PPPQLDSAPG EKNPIFTASL PLSLPQAMFF QETTEEKPQF  240
FGSNFLLNQF QQTQVPANPA FFVPLPSFSS SMENLVSTPH PGARSEIFLR PQPNQSLNFH  300
QLHPVPYHLQ HRPLKPKSLS AGDEAIAIQH QQQQVLVDQL LKTAELVEAG NLVGAHGILA  360
RLNHQLPSAI GEPFLRSAFY FKEALQLLVN SANPQAATSS PPHHHRTPFT SPLASPLDVV  420
LKLSAYKAFS EVSPILQFTN FTATQALLEE IGAADCIHII DFDIGVGGQW SSFMQELAHR  480
RSSSSALSML KITAFVSPYA FHPLELHLTK ENLSHFAADL NIPFEINIAS IESFDPAEIL  540
VLSAGSNEAI AVNLPVGVWQ GPSFPTLLRL VKQLLPKIVI SMDQGCDRGD LLFSHYLRHA  600
LQSCIVLLDS FDAAGTDQDL TNKIERFVLQ PRIENCVIGR HCTAEKMLPW RTLFASAGFV  660
PFQFSNFTEA QAECLLKRVQ VRGFHVEKRQ AALYLYWQRG ELASVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-96GRAS family protein